Results 121 - 140 of 199 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19044 | 5' | -57.1 | NC_004684.1 | + | 7920 | 0.67 | 0.569291 |
Target: 5'- gGCCGCgCAGGUGGUgGAcaUCGCcGCCg -3' miRNA: 3'- aUGGCGgGUCUGCCGaCU--AGCGuUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 10150 | 0.67 | 0.569291 |
Target: 5'- gUGCCGCCCgcccaggugGGGCguuuguccggcaGGCUGAgcaccaUCGCGccGCCg -3' miRNA: 3'- -AUGGCGGG---------UCUG------------CCGACU------AGCGU--UGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 47853 | 0.67 | 0.578869 |
Target: 5'- cACCGCCCGGcgcacccGCaGCUGG-CGUugAGCCa -3' miRNA: 3'- aUGGCGGGUC-------UGcCGACUaGCG--UUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 11934 | 0.67 | 0.579935 |
Target: 5'- gGCCGUCCGc-UGGCcaUGGUCGcCAGCCu -3' miRNA: 3'- aUGGCGGGUcuGCCG--ACUAGC-GUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 47285 | 0.67 | 0.579935 |
Target: 5'- cGCCGCCCAGcggUGGCUGGaccUUGUcgUCg -3' miRNA: 3'- aUGGCGGGUCu--GCCGACU---AGCGuuGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 27511 | 0.67 | 0.579935 |
Target: 5'- gGCgGgCCAGA-GGCUGGcaaggacgugCGCAGCCg -3' miRNA: 3'- aUGgCgGGUCUgCCGACUa---------GCGUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 27785 | 0.67 | 0.579935 |
Target: 5'- -cCCGCCC-GACGGUg---CGCGGCg -3' miRNA: 3'- auGGCGGGuCUGCCGacuaGCGUUGg -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 23959 | 0.67 | 0.590621 |
Target: 5'- cUGCCGagccuguacaaCCCGGACGGCUcGcucaagccGUCGCcaGGCCa -3' miRNA: 3'- -AUGGC-----------GGGUCUGCCGA-C--------UAGCG--UUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 919 | 0.67 | 0.590621 |
Target: 5'- aGCCGCCaccggguGGCGGCgugGAgacaaCGCcGCCa -3' miRNA: 3'- aUGGCGGgu-----CUGCCGa--CUa----GCGuUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 24623 | 0.67 | 0.590621 |
Target: 5'- gGCCGCUCAaacCGGg-GAUCGCAccgGCCa -3' miRNA: 3'- aUGGCGGGUcu-GCCgaCUAGCGU---UGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 9664 | 0.67 | 0.590621 |
Target: 5'- cUGCCGCCUGGGCGuGCcaccaguccuUGGccaucucguugCGCAGCCa -3' miRNA: 3'- -AUGGCGGGUCUGC-CG----------ACUa----------GCGUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 23422 | 0.67 | 0.590621 |
Target: 5'- --aCGCCCGcGcACGGCUGAUgCuCGGCCu -3' miRNA: 3'- augGCGGGU-C-UGCCGACUA-GcGUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 63598 | 0.67 | 0.590621 |
Target: 5'- gACCGCCaAGGCGGCggcGUCaauguCGACCa -3' miRNA: 3'- aUGGCGGgUCUGCCGac-UAGc----GUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 44929 | 0.67 | 0.590621 |
Target: 5'- aACCgGCCUGGAgcgcgGGCggGAUCGCcGCCg -3' miRNA: 3'- aUGG-CGGGUCUg----CCGa-CUAGCGuUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 18873 | 0.67 | 0.594905 |
Target: 5'- gGCCGCacucagggcaCCAGcGCGGCUccuccacgucggcggGGUCGCGGCg -3' miRNA: 3'- aUGGCG----------GGUC-UGCCGA---------------CUAGCGUUGg -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 35661 | 0.67 | 0.60134 |
Target: 5'- gGCCGUCgGcGGCGGUguGUCGCcACCg -3' miRNA: 3'- aUGGCGGgU-CUGCCGacUAGCGuUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 43701 | 0.67 | 0.60134 |
Target: 5'- cACCGCCUGGGCaGCUugGAUgCGCugguauGCCu -3' miRNA: 3'- aUGGCGGGUCUGcCGA--CUA-GCGu-----UGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 7103 | 0.67 | 0.612084 |
Target: 5'- gGCCGCCgAGGaccgGGCca--CGCAACCg -3' miRNA: 3'- aUGGCGGgUCUg---CCGacuaGCGUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 63745 | 0.67 | 0.612084 |
Target: 5'- gACCcgGCaCCGGGCGGCcacuaguUUGCGGCCg -3' miRNA: 3'- aUGG--CG-GGUCUGCCGacu----AGCGUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 36898 | 0.67 | 0.612084 |
Target: 5'- aACCaGCUCGGACuGGCcGGUgGCAucGCCc -3' miRNA: 3'- aUGG-CGGGUCUG-CCGaCUAgCGU--UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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