miRNA display CGI


Results 61 - 80 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19044 5' -57.1 NC_004684.1 + 63745 0.67 0.612084
Target:  5'- gACCcgGCaCCGGGCGGCcacuaguUUGCGGCCg -3'
miRNA:   3'- aUGG--CG-GGUCUGCCGacu----AGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 15154 0.67 0.612084
Target:  5'- cGCCGCUguGgcaccACGGcCUGAUCGacGCCg -3'
miRNA:   3'- aUGGCGGguC-----UGCC-GACUAGCguUGG- -5'
19044 5' -57.1 NC_004684.1 + 35661 0.67 0.60134
Target:  5'- gGCCGUCgGcGGCGGUguGUCGCcACCg -3'
miRNA:   3'- aUGGCGGgU-CUGCCGacUAGCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 43701 0.67 0.60134
Target:  5'- cACCGCCUGGGCaGCUugGAUgCGCugguauGCCu -3'
miRNA:   3'- aUGGCGGGUCUGcCGA--CUA-GCGu-----UGG- -5'
19044 5' -57.1 NC_004684.1 + 18873 0.67 0.594905
Target:  5'- gGCCGCacucagggcaCCAGcGCGGCUccuccacgucggcggGGUCGCGGCg -3'
miRNA:   3'- aUGGCG----------GGUC-UGCCGA---------------CUAGCGUUGg -5'
19044 5' -57.1 NC_004684.1 + 9664 0.67 0.590621
Target:  5'- cUGCCGCCUGGGCGuGCcaccaguccuUGGccaucucguugCGCAGCCa -3'
miRNA:   3'- -AUGGCGGGUCUGC-CG----------ACUa----------GCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 23959 0.67 0.590621
Target:  5'- cUGCCGagccuguacaaCCCGGACGGCUcGcucaagccGUCGCcaGGCCa -3'
miRNA:   3'- -AUGGC-----------GGGUCUGCCGA-C--------UAGCG--UUGG- -5'
19044 5' -57.1 NC_004684.1 + 24623 0.67 0.590621
Target:  5'- gGCCGCUCAaacCGGg-GAUCGCAccgGCCa -3'
miRNA:   3'- aUGGCGGGUcu-GCCgaCUAGCGU---UGG- -5'
19044 5' -57.1 NC_004684.1 + 23422 0.67 0.590621
Target:  5'- --aCGCCCGcGcACGGCUGAUgCuCGGCCu -3'
miRNA:   3'- augGCGGGU-C-UGCCGACUA-GcGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 44929 0.67 0.590621
Target:  5'- aACCgGCCUGGAgcgcgGGCggGAUCGCcGCCg -3'
miRNA:   3'- aUGG-CGGGUCUg----CCGa-CUAGCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 63598 0.67 0.590621
Target:  5'- gACCGCCaAGGCGGCggcGUCaauguCGACCa -3'
miRNA:   3'- aUGGCGGgUCUGCCGac-UAGc----GUUGG- -5'
19044 5' -57.1 NC_004684.1 + 919 0.67 0.590621
Target:  5'- aGCCGCCaccggguGGCGGCgugGAgacaaCGCcGCCa -3'
miRNA:   3'- aUGGCGGgu-----CUGCCGa--CUa----GCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 47285 0.67 0.579935
Target:  5'- cGCCGCCCAGcggUGGCUGGaccUUGUcgUCg -3'
miRNA:   3'- aUGGCGGGUCu--GCCGACU---AGCGuuGG- -5'
19044 5' -57.1 NC_004684.1 + 27785 0.67 0.579935
Target:  5'- -cCCGCCC-GACGGUg---CGCGGCg -3'
miRNA:   3'- auGGCGGGuCUGCCGacuaGCGUUGg -5'
19044 5' -57.1 NC_004684.1 + 11934 0.67 0.579935
Target:  5'- gGCCGUCCGc-UGGCcaUGGUCGcCAGCCu -3'
miRNA:   3'- aUGGCGGGUcuGCCG--ACUAGC-GUUGG- -5'
19044 5' -57.1 NC_004684.1 + 27511 0.67 0.579935
Target:  5'- gGCgGgCCAGA-GGCUGGcaaggacgugCGCAGCCg -3'
miRNA:   3'- aUGgCgGGUCUgCCGACUa---------GCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 47853 0.67 0.578869
Target:  5'- cACCGCCCGGcgcacccGCaGCUGG-CGUugAGCCa -3'
miRNA:   3'- aUGGCGGGUC-------UGcCGACUaGCG--UUGG- -5'
19044 5' -57.1 NC_004684.1 + 58337 0.67 0.569291
Target:  5'- gGCgCGCCCGGugGcccuGCUGG-CGUuGCCg -3'
miRNA:   3'- aUG-GCGGGUCugC----CGACUaGCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 7920 0.67 0.569291
Target:  5'- gGCCGCgCAGGUGGUgGAcaUCGCcGCCg -3'
miRNA:   3'- aUGGCGgGUCUGCCGaCU--AGCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 2870 0.67 0.569291
Target:  5'- aGCCGCUgGGcgucauCGGUgccUGGUgGCAGCCg -3'
miRNA:   3'- aUGGCGGgUCu-----GCCG---ACUAgCGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.