Results 101 - 120 of 199 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19044 | 5' | -57.1 | NC_004684.1 | + | 31109 | 0.68 | 0.536637 |
Target: 5'- cGCCGCgCAGGC-GCUGGaggaccuUgGCGACCu -3' miRNA: 3'- aUGGCGgGUCUGcCGACU-------AgCGUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 39201 | 0.68 | 0.534551 |
Target: 5'- cACCGCCCAGAaggggucgggguacCGcucGCUGAUCuuGCGcGCCg -3' miRNA: 3'- aUGGCGGGUCU--------------GC---CGACUAG--CGU-UGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 47237 | 0.68 | 0.527275 |
Target: 5'- cACCGCCuCGGgcgcgaggguaGCGGCUGcgCGgAACa -3' miRNA: 3'- aUGGCGG-GUC-----------UGCCGACuaGCgUUGg -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 36744 | 0.68 | 0.527275 |
Target: 5'- cGCCGUCCcGGC-GCUGA-CGCcGCCa -3' miRNA: 3'- aUGGCGGGuCUGcCGACUaGCGuUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 40990 | 0.68 | 0.527275 |
Target: 5'- aGCgCGCCgGuGGCGGCguuggccaGAUCGCcGCCg -3' miRNA: 3'- aUG-GCGGgU-CUGCCGa-------CUAGCGuUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 24869 | 0.68 | 0.527275 |
Target: 5'- cGCCGaCCAcGGCGGUgagcgcgccguUGAUCGCGuugGCCu -3' miRNA: 3'- aUGGCgGGU-CUGCCG-----------ACUAGCGU---UGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 47892 | 0.68 | 0.521067 |
Target: 5'- gUGCCGucccaCCCAGcaGCGGCUGGcuccaggggcgcaugUCGCGcggGCCa -3' miRNA: 3'- -AUGGC-----GGGUC--UGCCGACU---------------AGCGU---UGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 51006 | 0.68 | 0.516944 |
Target: 5'- gACCGCCCGGuagcugccCuGCUGGUCcaccggcaggauGCGGCCa -3' miRNA: 3'- aUGGCGGGUCu-------GcCGACUAG------------CGUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 21998 | 0.68 | 0.516944 |
Target: 5'- cGCCaggGUCCGGugGaGCUGGUCaGCAucgACCu -3' miRNA: 3'- aUGG---CGGGUCugC-CGACUAG-CGU---UGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 63508 | 0.68 | 0.516944 |
Target: 5'- --gCGCCagcaGGGCGGcCUGGcgUCGCAGCUc -3' miRNA: 3'- augGCGGg---UCUGCC-GACU--AGCGUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 65328 | 0.68 | 0.516944 |
Target: 5'- gGCCaGCgCCAGGCaGGCcacGAUgGCGGCCc -3' miRNA: 3'- aUGG-CG-GGUCUG-CCGa--CUAgCGUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 30177 | 0.69 | 0.506697 |
Target: 5'- cGCCGUCgGcGGCGaGCUGGUgGCcACCa -3' miRNA: 3'- aUGGCGGgU-CUGC-CGACUAgCGuUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 12816 | 0.69 | 0.505677 |
Target: 5'- gACgCGCCCGaggacGGCGGCucugcugccgacgUGGUCGCGgagGCCg -3' miRNA: 3'- aUG-GCGGGU-----CUGCCG-------------ACUAGCGU---UGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 42380 | 0.69 | 0.496537 |
Target: 5'- aGCUGCaCCGG-C-GCUGAgCGCGACCg -3' miRNA: 3'- aUGGCG-GGUCuGcCGACUaGCGUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 12755 | 0.69 | 0.496537 |
Target: 5'- cGCCcucuugGCCCGcGCGGCUGcgCcuGCGGCCa -3' miRNA: 3'- aUGG------CGGGUcUGCCGACuaG--CGUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 33876 | 0.69 | 0.496537 |
Target: 5'- gGCCuaCCAGGCGGUgcgGG-CGguGCCg -3' miRNA: 3'- aUGGcgGGUCUGCCGa--CUaGCguUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 13264 | 0.69 | 0.496537 |
Target: 5'- gACCGCCa--GCGcGCUGGUgGCcGCCg -3' miRNA: 3'- aUGGCGGgucUGC-CGACUAgCGuUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 18338 | 0.69 | 0.496537 |
Target: 5'- gUGCCGCCCccGGAgccgacCGGCgGcgCGguGCCg -3' miRNA: 3'- -AUGGCGGG--UCU------GCCGaCuaGCguUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 49201 | 0.69 | 0.496537 |
Target: 5'- gGCCuGCUCGGuCGGCcagucGGUCGguGCCg -3' miRNA: 3'- aUGG-CGGGUCuGCCGa----CUAGCguUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 30600 | 0.69 | 0.493506 |
Target: 5'- cGCCGCCCGcguGugGGCguucuucgagggagUGAcCGCGACg -3' miRNA: 3'- aUGGCGGGU---CugCCG--------------ACUaGCGUUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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