miRNA display CGI


Results 41 - 60 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19044 5' -57.1 NC_004684.1 + 10693 0.68 0.537681
Target:  5'- aACgGUCgGGACGcGgUGGcUCGCAACCg -3'
miRNA:   3'- aUGgCGGgUCUGC-CgACU-AGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 11523 0.69 0.486469
Target:  5'- cACCGCUCGGugGGcCUGGgccacaUcgacccgcccCGCAACCa -3'
miRNA:   3'- aUGGCGGGUCugCC-GACU------A----------GCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 11934 0.67 0.579935
Target:  5'- gGCCGUCCGc-UGGCcaUGGUCGcCAGCCu -3'
miRNA:   3'- aUGGCGGGUcuGCCG--ACUAGC-GUUGG- -5'
19044 5' -57.1 NC_004684.1 + 12235 0.71 0.349222
Target:  5'- gUGCCGCCC-GACGGCggcGAUC-CggUCa -3'
miRNA:   3'- -AUGGCGGGuCUGCCGa--CUAGcGuuGG- -5'
19044 5' -57.1 NC_004684.1 + 12755 0.69 0.496537
Target:  5'- cGCCcucuugGCCCGcGCGGCUGcgCcuGCGGCCa -3'
miRNA:   3'- aUGG------CGGGUcUGCCGACuaG--CGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 12816 0.69 0.505677
Target:  5'- gACgCGCCCGaggacGGCGGCucugcugccgacgUGGUCGCGgagGCCg -3'
miRNA:   3'- aUG-GCGGGU-----CUGCCG-------------ACUAGCGU---UGG- -5'
19044 5' -57.1 NC_004684.1 + 13090 0.68 0.558696
Target:  5'- aGCCGCCaAGGgGGCcGAUgCGCGcACCc -3'
miRNA:   3'- aUGGCGGgUCUgCCGaCUA-GCGU-UGG- -5'
19044 5' -57.1 NC_004684.1 + 13264 0.69 0.496537
Target:  5'- gACCGCCa--GCGcGCUGGUgGCcGCCg -3'
miRNA:   3'- aUGGCGGgucUGC-CGACUAgCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 13720 0.69 0.466632
Target:  5'- -cCCGaCCCAGGC-GCUGucgGUCGguGCCa -3'
miRNA:   3'- auGGC-GGGUCUGcCGAC---UAGCguUGG- -5'
19044 5' -57.1 NC_004684.1 + 13909 0.66 0.676582
Target:  5'- cACCGacggCCAGAucgacagcUGGCUGGcggcUCGCAACa -3'
miRNA:   3'- aUGGCg---GGUCU--------GCCGACU----AGCGUUGg -5'
19044 5' -57.1 NC_004684.1 + 15014 0.74 0.263532
Target:  5'- cGCCGCCUGGAuCGGCUGGgacggcaccaucgagUCGguGCUg -3'
miRNA:   3'- aUGGCGGGUCU-GCCGACU---------------AGCguUGG- -5'
19044 5' -57.1 NC_004684.1 + 15154 0.67 0.612084
Target:  5'- cGCCGCUguGgcaccACGGcCUGAUCGacGCCg -3'
miRNA:   3'- aUGGCGGguC-----UGCC-GACUAGCguUGG- -5'
19044 5' -57.1 NC_004684.1 + 15287 0.66 0.633615
Target:  5'- cACCaGCCC-GACguuuGGCUGG-CGCGACg -3'
miRNA:   3'- aUGG-CGGGuCUG----CCGACUaGCGUUGg -5'
19044 5' -57.1 NC_004684.1 + 15514 0.71 0.394494
Target:  5'- gGCCGCCCggggccgggcgcuGGAgGcGCUGAUCcgcguugguggaccgGCGACCa -3'
miRNA:   3'- aUGGCGGG-------------UCUgC-CGACUAG---------------CGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 15880 0.67 0.569291
Target:  5'- gGCCGCCa--GCGGCccugUGCAGCCg -3'
miRNA:   3'- aUGGCGGgucUGCCGacuaGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 15886 0.66 0.687248
Target:  5'- -cCCG-CCAGGCGGCggUGAccgggCGguGCCa -3'
miRNA:   3'- auGGCgGGUCUGCCG--ACUa----GCguUGG- -5'
19044 5' -57.1 NC_004684.1 + 16255 0.66 0.633615
Target:  5'- gGCgGCgCAGAuucguCGGCaGAugcUCGCGGCCa -3'
miRNA:   3'- aUGgCGgGUCU-----GCCGaCU---AGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 16317 0.66 0.662657
Target:  5'- gGCCGCcggugauguaaugaCCAGcgaggaGCGGCUGG-CGCuGGCCg -3'
miRNA:   3'- aUGGCG--------------GGUC------UGCCGACUaGCG-UUGG- -5'
19044 5' -57.1 NC_004684.1 + 17065 0.68 0.558696
Target:  5'- gGCCGCCCGccUGGCcGggCGC-ACCg -3'
miRNA:   3'- aUGGCGGGUcuGCCGaCuaGCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 17276 0.67 0.621769
Target:  5'- aACUGCUCGG-CGGCgcugGuuuucuggccgggGUCGCGGCCc -3'
miRNA:   3'- aUGGCGGGUCuGCCGa---C-------------UAGCGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.