miRNA display CGI


Results 81 - 100 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19044 5' -57.1 NC_004684.1 + 24912 0.66 0.676582
Target:  5'- cGCCGCCgcgauCAG-CGcGCUGggCGgCGACCc -3'
miRNA:   3'- aUGGCGG-----GUCuGC-CGACuaGC-GUUGG- -5'
19044 5' -57.1 NC_004684.1 + 25320 0.66 0.633615
Target:  5'- -uCgGCCCuGGCGGCguAUgGCGGCCu -3'
miRNA:   3'- auGgCGGGuCUGCCGacUAgCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 26052 0.7 0.437687
Target:  5'- gGCCuugGCCCGGccguCGGC-GGUCGCGguGCCg -3'
miRNA:   3'- aUGG---CGGGUCu---GCCGaCUAGCGU--UGG- -5'
19044 5' -57.1 NC_004684.1 + 26407 0.69 0.476499
Target:  5'- cGCCGCCaccGGCGcGCUGGcagcgggguUCGCcGCCg -3'
miRNA:   3'- aUGGCGGgu-CUGC-CGACU---------AGCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 26665 0.72 0.341106
Target:  5'- cACCGCCCccGcCGcGCUGGUCGUcccGGCCa -3'
miRNA:   3'- aUGGCGGGu-CuGC-CGACUAGCG---UUGG- -5'
19044 5' -57.1 NC_004684.1 + 26698 0.66 0.680854
Target:  5'- cGCCGCCCAGcugaaguucgucgccACcuuGCUGGccgagCGCGACUg -3'
miRNA:   3'- aUGGCGGGUC---------------UGc--CGACUa----GCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 26840 0.66 0.633615
Target:  5'- -uUCGCCCAGcuccuggaggucGCGGa-GGUCGCcACCg -3'
miRNA:   3'- auGGCGGGUC------------UGCCgaCUAGCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 26949 0.66 0.687248
Target:  5'- gGCCGCCUGGGCaccGCUGAcCaaGGCCg -3'
miRNA:   3'- aUGGCGGGUCUGc--CGACUaGcgUUGG- -5'
19044 5' -57.1 NC_004684.1 + 27093 0.71 0.374386
Target:  5'- cGCCGCCCAGAuCGGUaccGAcuUUGCGcugGCCg -3'
miRNA:   3'- aUGGCGGGUCU-GCCGa--CU--AGCGU---UGG- -5'
19044 5' -57.1 NC_004684.1 + 27126 0.67 0.622846
Target:  5'- cGuuGCCgGGAC-GCUGAUCGaCGugCu -3'
miRNA:   3'- aUggCGGgUCUGcCGACUAGC-GUugG- -5'
19044 5' -57.1 NC_004684.1 + 27511 0.67 0.579935
Target:  5'- gGCgGgCCAGA-GGCUGGcaaggacgugCGCAGCCg -3'
miRNA:   3'- aUGgCgGGUCUgCCGACUa---------GCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 27516 0.73 0.274257
Target:  5'- gACgGCCUGGGCGaGCUGAUgCGC-GCCa -3'
miRNA:   3'- aUGgCGGGUCUGC-CGACUA-GCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 27683 0.7 0.437687
Target:  5'- cACCGaCCCGucCGG-UGAUUGCGGCCu -3'
miRNA:   3'- aUGGC-GGGUcuGCCgACUAGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 27785 0.67 0.579935
Target:  5'- -cCCGCCC-GACGGUg---CGCGGCg -3'
miRNA:   3'- auGGCGGGuCUGCCGacuaGCGUUGg -5'
19044 5' -57.1 NC_004684.1 + 28159 0.66 0.633615
Target:  5'- cUACgGCCUgcaAUGGCUGGcgUGCAACCu -3'
miRNA:   3'- -AUGgCGGGuc-UGCCGACUa-GCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 28657 0.66 0.687248
Target:  5'- gUGCCG-CgAGACGGCggUGAcgcaggugauUCGCAACg -3'
miRNA:   3'- -AUGGCgGgUCUGCCG--ACU----------AGCGUUGg -5'
19044 5' -57.1 NC_004684.1 + 28769 0.95 0.008219
Target:  5'- aUACCGCCCAGACGGCUGAUCGacACCu -3'
miRNA:   3'- -AUGGCGGGUCUGCCGACUAGCguUGG- -5'
19044 5' -57.1 NC_004684.1 + 28925 0.69 0.456872
Target:  5'- gUGCCuGCCUuGuCGGCgUGAUCGC-GCCg -3'
miRNA:   3'- -AUGG-CGGGuCuGCCG-ACUAGCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 28953 0.66 0.637922
Target:  5'- gACUGCCaCaaccuccgacuucgaGGugGaGCUGAgccugCGCGACCg -3'
miRNA:   3'- aUGGCGG-G---------------UCugC-CGACUa----GCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 29435 0.68 0.537681
Target:  5'- --gCGCCCGGACccGCUGG--GCGACCg -3'
miRNA:   3'- augGCGGGUCUGc-CGACUagCGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.