miRNA display CGI


Results 21 - 40 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19044 5' -57.1 NC_004684.1 + 60190 0.66 0.665876
Target:  5'- cGCgGCCUggcaGGAUGuGCUGAUCgGCGuugGCCu -3'
miRNA:   3'- aUGgCGGG----UCUGC-CGACUAG-CGU---UGG- -5'
19044 5' -57.1 NC_004684.1 + 59467 0.66 0.687248
Target:  5'- gGCCuuGCCUGGGuucuccacCGGCUGGcUgGCGGCCa -3'
miRNA:   3'- aUGG--CGGGUCU--------GCCGACU-AgCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 59385 0.71 0.357475
Target:  5'- aACCGCCCGG-CGGCacaGUCGCuGCa -3'
miRNA:   3'- aUGGCGGGUCuGCCGac-UAGCGuUGg -5'
19044 5' -57.1 NC_004684.1 + 58734 0.72 0.317583
Target:  5'- gGCCGCaCCGGGCacGCaUGAUCGCGuuGCCc -3'
miRNA:   3'- aUGGCG-GGUCUGc-CG-ACUAGCGU--UGG- -5'
19044 5' -57.1 NC_004684.1 + 58620 0.74 0.235795
Target:  5'- gACgGCCCGuGGCGGCUGGUgcCGCGcuggGCCu -3'
miRNA:   3'- aUGgCGGGU-CUGCCGACUA--GCGU----UGG- -5'
19044 5' -57.1 NC_004684.1 + 58374 0.66 0.676582
Target:  5'- uUGCCGCCCcGcACGGCaccgCGCGuggagGCCu -3'
miRNA:   3'- -AUGGCGGGuC-UGCCGacuaGCGU-----UGG- -5'
19044 5' -57.1 NC_004684.1 + 58337 0.67 0.569291
Target:  5'- gGCgCGCCCGGugGcccuGCUGG-CGUuGCCg -3'
miRNA:   3'- aUG-GCGGGUCugC----CGACUaGCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 58255 0.7 0.447222
Target:  5'- cUGCCGCgCCgAGGCGGUcGAaCGguACCg -3'
miRNA:   3'- -AUGGCG-GG-UCUGCCGaCUaGCguUGG- -5'
19044 5' -57.1 NC_004684.1 + 57982 0.75 0.218319
Target:  5'- gGCUGUCCAGGCuGGcCUGAUCGCugUCg -3'
miRNA:   3'- aUGGCGGGUCUG-CC-GACUAGCGuuGG- -5'
19044 5' -57.1 NC_004684.1 + 57944 0.7 0.409798
Target:  5'- gACCGCCUgcGGugcucgcuGCGGCUGGUgCGCAcgcugcugGCCg -3'
miRNA:   3'- aUGGCGGG--UC--------UGCCGACUA-GCGU--------UGG- -5'
19044 5' -57.1 NC_004684.1 + 57734 0.71 0.383043
Target:  5'- gGCaCGCCCAGGCGGCaGcugCGCAGu- -3'
miRNA:   3'- aUG-GCGGGUCUGCCGaCua-GCGUUgg -5'
19044 5' -57.1 NC_004684.1 + 57122 0.68 0.557639
Target:  5'- gACCGCUggCAGcacuggcGCGGCUGGUuCGCcuCCa -3'
miRNA:   3'- aUGGCGG--GUC-------UGCCGACUA-GCGuuGG- -5'
19044 5' -57.1 NC_004684.1 + 56778 0.7 0.400751
Target:  5'- --aCGCC--GACGGCUGGUC-CAACCu -3'
miRNA:   3'- augGCGGguCUGCCGACUAGcGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 55762 0.66 0.676582
Target:  5'- aUGCCGacggUCAGGCGGCcGAcggccagcUCGguGCCg -3'
miRNA:   3'- -AUGGCg---GGUCUGCCGaCU--------AGCguUGG- -5'
19044 5' -57.1 NC_004684.1 + 54983 0.66 0.655139
Target:  5'- gGCCGCCgaccacagCGGACGGCUcc-UGCGGCa -3'
miRNA:   3'- aUGGCGG--------GUCUGCCGAcuaGCGUUGg -5'
19044 5' -57.1 NC_004684.1 + 54171 0.68 0.548156
Target:  5'- -cCCGCCauuGAucUGGCUGGUCGCccgcucgauuucAGCCa -3'
miRNA:   3'- auGGCGGgu-CU--GCCGACUAGCG------------UUGG- -5'
19044 5' -57.1 NC_004684.1 + 54097 0.68 0.558696
Target:  5'- aGCUGCUCcGACGGCg---CGCAccaGCCa -3'
miRNA:   3'- aUGGCGGGuCUGCCGacuaGCGU---UGG- -5'
19044 5' -57.1 NC_004684.1 + 52908 0.66 0.687248
Target:  5'- -uCCGgCCAGcACGGCgg--CGUGGCCg -3'
miRNA:   3'- auGGCgGGUC-UGCCGacuaGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 52384 0.66 0.655139
Target:  5'- aGCCGaUCCAGGCGGC-GGUCagGCAGu- -3'
miRNA:   3'- aUGGC-GGGUCUGCCGaCUAG--CGUUgg -5'
19044 5' -57.1 NC_004684.1 + 51998 0.78 0.12816
Target:  5'- gGCCGCCCcGAUGGCggccUCGUAGCCg -3'
miRNA:   3'- aUGGCGGGuCUGCCGacu-AGCGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.