miRNA display CGI


Results 81 - 100 of 199 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19044 5' -57.1 NC_004684.1 + 36898 0.67 0.612084
Target:  5'- aACCaGCUCGGACuGGCcGGUgGCAucGCCc -3'
miRNA:   3'- aUGG-CGGGUCUG-CCGaCUAgCGU--UGG- -5'
19044 5' -57.1 NC_004684.1 + 36744 0.68 0.527275
Target:  5'- cGCCGUCCcGGC-GCUGA-CGCcGCCa -3'
miRNA:   3'- aUGGCGGGuCUGcCGACUaGCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 36231 0.75 0.207293
Target:  5'- cACCGCCgAGACcGCUGG-CGUGGCCa -3'
miRNA:   3'- aUGGCGGgUCUGcCGACUaGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 35661 0.67 0.60134
Target:  5'- gGCCGUCgGcGGCGGUguGUCGCcACCg -3'
miRNA:   3'- aUGGCGGgU-CUGCCGacUAGCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 34144 0.69 0.456872
Target:  5'- cGCCGCCuCGGGCGGCacGGUgcUGCucACCg -3'
miRNA:   3'- aUGGCGG-GUCUGCCGa-CUA--GCGu-UGG- -5'
19044 5' -57.1 NC_004684.1 + 33876 0.69 0.496537
Target:  5'- gGCCuaCCAGGCGGUgcgGG-CGguGCCg -3'
miRNA:   3'- aUGGcgGGUCUGCCGa--CUaGCguUGG- -5'
19044 5' -57.1 NC_004684.1 + 33253 0.82 0.069492
Target:  5'- gUGCCGCCCgAGGCGGCgagGAaCGUGACCg -3'
miRNA:   3'- -AUGGCGGG-UCUGCCGa--CUaGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 33116 0.71 0.374386
Target:  5'- cGCCGCCCuugcuGACGGUggccugCGCAGuCCa -3'
miRNA:   3'- aUGGCGGGu----CUGCCGacua--GCGUU-GG- -5'
19044 5' -57.1 NC_004684.1 + 32550 0.74 0.229843
Target:  5'- aACCGCCC--ACGGCUGcaugCGCAGCa -3'
miRNA:   3'- aUGGCGGGucUGCCGACua--GCGUUGg -5'
19044 5' -57.1 NC_004684.1 + 31873 0.68 0.537681
Target:  5'- aGCUGCCCGccGACGuGCUGGUgGacGCCg -3'
miRNA:   3'- aUGGCGGGU--CUGC-CGACUAgCguUGG- -5'
19044 5' -57.1 NC_004684.1 + 31188 0.66 0.644382
Target:  5'- cGCUGCgCAGcugcauccACGGCUGAggugccagCGCGucGCCa -3'
miRNA:   3'- aUGGCGgGUC--------UGCCGACUa-------GCGU--UGG- -5'
19044 5' -57.1 NC_004684.1 + 31109 0.68 0.536637
Target:  5'- cGCCGCgCAGGC-GCUGGaggaccuUgGCGACCu -3'
miRNA:   3'- aUGGCGgGUCUGcCGACU-------AgCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 30986 0.69 0.476499
Target:  5'- cACCGUUgAGAC-GCUGAUggCGCAGCUg -3'
miRNA:   3'- aUGGCGGgUCUGcCGACUA--GCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 30613 0.66 0.655139
Target:  5'- cGCCGCcgaCCAGcguCGGCaccGggCGCGGCCc -3'
miRNA:   3'- aUGGCG---GGUCu--GCCGa--CuaGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 30600 0.69 0.493506
Target:  5'- cGCCGCCCGcguGugGGCguucuucgagggagUGAcCGCGACg -3'
miRNA:   3'- aUGGCGGGU---CugCCG--------------ACUaGCGUUGg -5'
19044 5' -57.1 NC_004684.1 + 30496 0.72 0.317583
Target:  5'- cACCGgCCAGucCGaGCUGGUUGcCGACCa -3'
miRNA:   3'- aUGGCgGGUCu-GC-CGACUAGC-GUUGG- -5'
19044 5' -57.1 NC_004684.1 + 30177 0.69 0.506697
Target:  5'- cGCCGUCgGcGGCGaGCUGGUgGCcACCa -3'
miRNA:   3'- aUGGCGGgU-CUGC-CGACUAgCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 29867 0.66 0.644382
Target:  5'- cGCCGCCgCAGuCGuGCaucagGucGUCGUAACCg -3'
miRNA:   3'- aUGGCGG-GUCuGC-CGa----C--UAGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 29651 0.7 0.428269
Target:  5'- aACCGCCaacGACGuGCuccUGcgCGCGGCCg -3'
miRNA:   3'- aUGGCGGgu-CUGC-CG---ACuaGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 29435 0.68 0.537681
Target:  5'- --gCGCCCGGACccGCUGG--GCGACCg -3'
miRNA:   3'- augGCGGGUCUGc-CGACUagCGUUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.