miRNA display CGI


Results 61 - 80 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19044 5' -57.1 NC_004684.1 + 60754 0.7 0.398062
Target:  5'- gGCCGCCgGGugGGggUUGGUCaggacuugaagaugGCGACCa -3'
miRNA:   3'- aUGGCGGgUCugCC--GACUAG--------------CGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 7560 0.7 0.400751
Target:  5'- gACCGgcCCCGGguggcgcugguGCGGCUGGUgCGCGGCa -3'
miRNA:   3'- aUGGC--GGGUC-----------UGCCGACUA-GCGUUGg -5'
19044 5' -57.1 NC_004684.1 + 45238 0.69 0.476499
Target:  5'- gUGCUGgUCAGGCccggcagccaGcGCUGGUCGCGGCCc -3'
miRNA:   3'- -AUGGCgGGUCUG----------C-CGACUAGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 26407 0.69 0.476499
Target:  5'- cGCCGCCaccGGCGcGCUGGcagcgggguUCGCcGCCg -3'
miRNA:   3'- aUGGCGGgu-CUGC-CGACU---------AGCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 30986 0.69 0.476499
Target:  5'- cACCGUUgAGAC-GCUGAUggCGCAGCUg -3'
miRNA:   3'- aUGGCGGgUCUGcCGACUA--GCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 2870 0.69 0.486469
Target:  5'- -gUCGCgCCGGACGaccuGCUGGUgCGCAACa -3'
miRNA:   3'- auGGCG-GGUCUGC----CGACUA-GCGUUGg -5'
19044 5' -57.1 NC_004684.1 + 5788 0.69 0.486469
Target:  5'- cUACUGCgCCAGGCGuGCgaGGUCGgGACg -3'
miRNA:   3'- -AUGGCG-GGUCUGC-CGa-CUAGCgUUGg -5'
19044 5' -57.1 NC_004684.1 + 11523 0.69 0.486469
Target:  5'- cACCGCUCGGugGGcCUGGgccacaUcgacccgcccCGCAACCa -3'
miRNA:   3'- aUGGCGGGUCugCC-GACU------A----------GCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 8525 0.69 0.486469
Target:  5'- --aCGCCagcaAGucGCGGCUGAUCgGCAACg -3'
miRNA:   3'- augGCGGg---UC--UGCCGACUAG-CGUUGg -5'
19044 5' -57.1 NC_004684.1 + 30600 0.69 0.493506
Target:  5'- cGCCGCCCGcguGugGGCguucuucgagggagUGAcCGCGACg -3'
miRNA:   3'- aUGGCGGGU---CugCCG--------------ACUaGCGUUGg -5'
19044 5' -57.1 NC_004684.1 + 9918 0.69 0.476499
Target:  5'- gGCUGaCCgAGGCGG-UGAUUGUGGCCg -3'
miRNA:   3'- aUGGC-GGgUCUGCCgACUAGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 13720 0.69 0.466632
Target:  5'- -cCCGaCCCAGGC-GCUGucgGUCGguGCCa -3'
miRNA:   3'- auGGC-GGGUCUGcCGAC---UAGCguUGG- -5'
19044 5' -57.1 NC_004684.1 + 1255 0.7 0.400751
Target:  5'- gGCCccgGCCCAGAUGcGCUGGcUgGUGGCCa -3'
miRNA:   3'- aUGG---CGGGUCUGC-CGACU-AgCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 56778 0.7 0.400751
Target:  5'- --aCGCC--GACGGCUGGUC-CAACCu -3'
miRNA:   3'- augGCGGguCUGCCGACUAGcGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 57944 0.7 0.409798
Target:  5'- gACCGCCUgcGGugcucgcuGCGGCUGGUgCGCAcgcugcugGCCg -3'
miRNA:   3'- aUGGCGGG--UC--------UGCCGACUA-GCGU--------UGG- -5'
19044 5' -57.1 NC_004684.1 + 29651 0.7 0.428269
Target:  5'- aACCGCCaacGACGuGCuccUGcgCGCGGCCg -3'
miRNA:   3'- aUGGCGGgu-CUGC-CG---ACuaGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 27683 0.7 0.437687
Target:  5'- cACCGaCCCGucCGG-UGAUUGCGGCCu -3'
miRNA:   3'- aUGGC-GGGUcuGCCgACUAGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 58255 0.7 0.447222
Target:  5'- cUGCCGCgCCgAGGCGGUcGAaCGguACCg -3'
miRNA:   3'- -AUGGCG-GG-UCUGCCGaCUaGCguUGG- -5'
19044 5' -57.1 NC_004684.1 + 24774 0.69 0.456872
Target:  5'- gACCgGCaCCGGGCcGCUGGUCGauaCGGCCa -3'
miRNA:   3'- aUGG-CG-GGUCUGcCGACUAGC---GUUGG- -5'
19044 5' -57.1 NC_004684.1 + 34144 0.69 0.456872
Target:  5'- cGCCGCCuCGGGCGGCacGGUgcUGCucACCg -3'
miRNA:   3'- aUGGCGG-GUCUGCCGa-CUA--GCGu-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.