miRNA display CGI


Results 101 - 120 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19044 5' -57.1 NC_004684.1 + 5788 0.69 0.486469
Target:  5'- cUACUGCgCCAGGCGuGCgaGGUCGgGACg -3'
miRNA:   3'- -AUGGCG-GGUCUGC-CGa-CUAGCgUUGg -5'
19044 5' -57.1 NC_004684.1 + 11523 0.69 0.486469
Target:  5'- cACCGCUCGGugGGcCUGGgccacaUcgacccgcccCGCAACCa -3'
miRNA:   3'- aUGGCGGGUCugCC-GACU------A----------GCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 15014 0.74 0.263532
Target:  5'- cGCCGCCUGGAuCGGCUGGgacggcaccaucgagUCGguGCUg -3'
miRNA:   3'- aUGGCGGGUCU-GCCGACU---------------AGCguUGG- -5'
19044 5' -57.1 NC_004684.1 + 21509 0.73 0.266847
Target:  5'- cGCCGCCagcguGGACGGCgcgcacaUGAUCGCcgacGCCa -3'
miRNA:   3'- aUGGCGGg----UCUGCCG-------ACUAGCGu---UGG- -5'
19044 5' -57.1 NC_004684.1 + 49844 0.73 0.267513
Target:  5'- -cUCGUCCAGGCGGUccUGGUagGCGACCa -3'
miRNA:   3'- auGGCGGGUCUGCCG--ACUAg-CGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 27516 0.73 0.274257
Target:  5'- gACgGCCUGGGCGaGCUGAUgCGC-GCCa -3'
miRNA:   3'- aUGgCGGGUCUGC-CGACUA-GCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 64948 0.73 0.295302
Target:  5'- gGCCGCCCAGGCGGgC-GAUguCGGCCu -3'
miRNA:   3'- aUGGCGGGUCUGCC-GaCUAgcGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 37224 0.73 0.295302
Target:  5'- cGCCGCC--GACGGCguUGAUCGCccacuGGCCg -3'
miRNA:   3'- aUGGCGGguCUGCCG--ACUAGCG-----UUGG- -5'
19044 5' -57.1 NC_004684.1 + 30496 0.72 0.317583
Target:  5'- cACCGgCCAGucCGaGCUGGUUGcCGACCa -3'
miRNA:   3'- aUGGCgGGUCu-GC-CGACUAGC-GUUGG- -5'
19044 5' -57.1 NC_004684.1 + 47946 0.72 0.333127
Target:  5'- cGCCGCCCGGGCaugGGCgcacgGugguuUCGCAgagGCCg -3'
miRNA:   3'- aUGGCGGGUCUG---CCGa----Cu----AGCGU---UGG- -5'
19044 5' -57.1 NC_004684.1 + 23699 0.74 0.248087
Target:  5'- aGCUGCCCAGGCGGU--GUCG-GACCu -3'
miRNA:   3'- aUGGCGGGUCUGCCGacUAGCgUUGG- -5'
19044 5' -57.1 NC_004684.1 + 32550 0.74 0.229843
Target:  5'- aACCGCCC--ACGGCUGcaugCGCAGCa -3'
miRNA:   3'- aUGGCGGGucUGCCGACua--GCGUUGg -5'
19044 5' -57.1 NC_004684.1 + 26949 0.66 0.687248
Target:  5'- gGCCGCCUGGGCaccGCUGAcCaaGGCCg -3'
miRNA:   3'- aUGGCGGGUCUGc--CGACUaGcgUUGG- -5'
19044 5' -57.1 NC_004684.1 + 42475 0.88 0.028645
Target:  5'- cGCCGCCCAG-CGcGCUGAUCGCGGCg -3'
miRNA:   3'- aUGGCGGGUCuGC-CGACUAGCGUUGg -5'
19044 5' -57.1 NC_004684.1 + 33253 0.82 0.069492
Target:  5'- gUGCCGCCCgAGGCGGCgagGAaCGUGACCg -3'
miRNA:   3'- -AUGGCGGG-UCUGCCGa--CUaGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 66692 0.81 0.082273
Target:  5'- gGCCGUCCAccGGCGGCUGAccUCGgGGCCg -3'
miRNA:   3'- aUGGCGGGU--CUGCCGACU--AGCgUUGG- -5'
19044 5' -57.1 NC_004684.1 + 61172 0.78 0.12816
Target:  5'- gGCCGCCCAGcUGGCcgaGAUCGC-GCCg -3'
miRNA:   3'- aUGGCGGGUCuGCCGa--CUAGCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 51998 0.78 0.12816
Target:  5'- gGCCGCCCcGAUGGCggccUCGUAGCCg -3'
miRNA:   3'- aUGGCGGGuCUGCCGacu-AGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 61461 0.75 0.212744
Target:  5'- gACCGCCCGG-UGGCcag-CGCGGCCa -3'
miRNA:   3'- aUGGCGGGUCuGCCGacuaGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 57982 0.75 0.218319
Target:  5'- gGCUGUCCAGGCuGGcCUGAUCGCugUCg -3'
miRNA:   3'- aUGGCGGGUCUG-CC-GACUAGCGuuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.