miRNA display CGI


Results 41 - 60 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19044 5' -57.1 NC_004684.1 + 28925 0.69 0.456872
Target:  5'- gUGCCuGCCUuGuCGGCgUGAUCGC-GCCg -3'
miRNA:   3'- -AUGG-CGGGuCuGCCG-ACUAGCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 47946 0.72 0.333127
Target:  5'- cGCCGCCCGGGCaugGGCgcacgGugguuUCGCAgagGCCg -3'
miRNA:   3'- aUGGCGGGUCUG---CCGa----Cu----AGCGU---UGG- -5'
19044 5' -57.1 NC_004684.1 + 33253 0.82 0.069492
Target:  5'- gUGCCGCCCgAGGCGGCgagGAaCGUGACCg -3'
miRNA:   3'- -AUGGCGGG-UCUGCCGa--CUaGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 40866 0.69 0.455902
Target:  5'- gACCGCCCAGGCGcgacacgucagcGgUGGUCaGCAcgugcucGCCa -3'
miRNA:   3'- aUGGCGGGUCUGC------------CgACUAG-CGU-------UGG- -5'
19044 5' -57.1 NC_004684.1 + 42475 0.88 0.028645
Target:  5'- cGCCGCCCAG-CGcGCUGAUCGCGGCg -3'
miRNA:   3'- aUGGCGGGUCuGC-CGACUAGCGUUGg -5'
19044 5' -57.1 NC_004684.1 + 2870 0.67 0.569291
Target:  5'- aGCCGCUgGGcgucauCGGUgccUGGUgGCAGCCg -3'
miRNA:   3'- aUGGCGGgUCu-----GCCG---ACUAgCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 61172 0.78 0.12816
Target:  5'- gGCCGCCCAGcUGGCcgaGAUCGC-GCCg -3'
miRNA:   3'- aUGGCGGGUCuGCCGa--CUAGCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 17065 0.68 0.558696
Target:  5'- gGCCGCCCGccUGGCcGggCGC-ACCg -3'
miRNA:   3'- aUGGCGGGUcuGCCGaCuaGCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 54171 0.68 0.548156
Target:  5'- -cCCGCCauuGAucUGGCUGGUCGCccgcucgauuucAGCCa -3'
miRNA:   3'- auGGCGGgu-CU--GCCGACUAGCG------------UUGG- -5'
19044 5' -57.1 NC_004684.1 + 40990 0.68 0.527275
Target:  5'- aGCgCGCCgGuGGCGGCguuggccaGAUCGCcGCCg -3'
miRNA:   3'- aUG-GCGGgU-CUGCCGa-------CUAGCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 21998 0.68 0.516944
Target:  5'- cGCCaggGUCCGGugGaGCUGGUCaGCAucgACCu -3'
miRNA:   3'- aUGG---CGGGUCugC-CGACUAG-CGU---UGG- -5'
19044 5' -57.1 NC_004684.1 + 45261 0.69 0.466632
Target:  5'- aUGCCGCgCUGGACGcGCUGA--GCuGCCa -3'
miRNA:   3'- -AUGGCG-GGUCUGC-CGACUagCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 42908 0.69 0.456872
Target:  5'- cACCGCCCcGGCGGUaGcgCGCuGAUCu -3'
miRNA:   3'- aUGGCGGGuCUGCCGaCuaGCG-UUGG- -5'
19044 5' -57.1 NC_004684.1 + 26052 0.7 0.437687
Target:  5'- gGCCuugGCCCGGccguCGGC-GGUCGCGguGCCg -3'
miRNA:   3'- aUGG---CGGGUCu---GCCGaCUAGCGU--UGG- -5'
19044 5' -57.1 NC_004684.1 + 43827 0.7 0.418972
Target:  5'- cGCgGCCCGG-CaGGCUGuccaggcCGCGACCg -3'
miRNA:   3'- aUGgCGGGUCuG-CCGACua-----GCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 7971 0.71 0.357475
Target:  5'- gGCCG-CCAGGCGGCcgugCGCAACa -3'
miRNA:   3'- aUGGCgGGUCUGCCGacuaGCGUUGg -5'
19044 5' -57.1 NC_004684.1 + 45555 0.72 0.341106
Target:  5'- gGCgGCCaUGGAugccCGGCUGAUCGCGcCCa -3'
miRNA:   3'- aUGgCGG-GUCU----GCCGACUAGCGUuGG- -5'
19044 5' -57.1 NC_004684.1 + 64948 0.73 0.295302
Target:  5'- gGCCGCCCAGGCGGgC-GAUguCGGCCu -3'
miRNA:   3'- aUGGCGGGUCUGCC-GaCUAgcGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 21509 0.73 0.266847
Target:  5'- cGCCGCCagcguGGACGGCgcgcacaUGAUCGCcgacGCCa -3'
miRNA:   3'- aUGGCGGg----UCUGCCG-------ACUAGCGu---UGG- -5'
19044 5' -57.1 NC_004684.1 + 57982 0.75 0.218319
Target:  5'- gGCUGUCCAGGCuGGcCUGAUCGCugUCg -3'
miRNA:   3'- aUGGCGGGUCUG-CC-GACUAGCGuuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.