miRNA display CGI


Results 61 - 80 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19044 5' -57.1 NC_004684.1 + 42908 0.69 0.456872
Target:  5'- cACCGCCCcGGCGGUaGcgCGCuGAUCu -3'
miRNA:   3'- aUGGCGGGuCUGCCGaCuaGCG-UUGG- -5'
19044 5' -57.1 NC_004684.1 + 20001 0.69 0.486469
Target:  5'- gUGCCgcGCCCAGAaGGCUGGcucagCGCcacuACCg -3'
miRNA:   3'- -AUGG--CGGGUCUgCCGACUa----GCGu---UGG- -5'
19044 5' -57.1 NC_004684.1 + 51998 0.78 0.12816
Target:  5'- gGCCGCCCcGAUGGCggccUCGUAGCCg -3'
miRNA:   3'- aUGGCGGGuCUGCCGacu-AGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 32550 0.74 0.229843
Target:  5'- aACCGCCC--ACGGCUGcaugCGCAGCa -3'
miRNA:   3'- aUGGCGGGucUGCCGACua--GCGUUGg -5'
19044 5' -57.1 NC_004684.1 + 49844 0.73 0.267513
Target:  5'- -cUCGUCCAGGCGGUccUGGUagGCGACCa -3'
miRNA:   3'- auGGCGGGUCUGCCG--ACUAg-CGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 37224 0.73 0.295302
Target:  5'- cGCCGCC--GACGGCguUGAUCGCccacuGGCCg -3'
miRNA:   3'- aUGGCGGguCUGCCG--ACUAGCG-----UUGG- -5'
19044 5' -57.1 NC_004684.1 + 37113 0.72 0.341106
Target:  5'- cGCCGCUCAGGuccucUGGCuUGA-CGUAGCCa -3'
miRNA:   3'- aUGGCGGGUCU-----GCCG-ACUaGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 33116 0.71 0.374386
Target:  5'- cGCCGCCCuugcuGACGGUggccugCGCAGuCCa -3'
miRNA:   3'- aUGGCGGGu----CUGCCGacua--GCGUU-GG- -5'
19044 5' -57.1 NC_004684.1 + 3937 0.7 0.437687
Target:  5'- aUGCCGgaaCUGGGCGGC-GAagGCGACCa -3'
miRNA:   3'- -AUGGCg--GGUCUGCCGaCUagCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 49527 0.7 0.447222
Target:  5'- cUugCGCUCAGGCGGCgugcggucggUGA-CGCAcACCu -3'
miRNA:   3'- -AugGCGGGUCUGCCG----------ACUaGCGU-UGG- -5'
19044 5' -57.1 NC_004684.1 + 31188 0.66 0.644382
Target:  5'- cGCUGCgCAGcugcauccACGGCUGAggugccagCGCGucGCCa -3'
miRNA:   3'- aUGGCGgGUC--------UGCCGACUa-------GCGU--UGG- -5'
19044 5' -57.1 NC_004684.1 + 2976 0.66 0.633615
Target:  5'- cGgUGCCCuGGACGGCggGggCGC-ACCu -3'
miRNA:   3'- aUgGCGGG-UCUGCCGa-CuaGCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 24869 0.68 0.527275
Target:  5'- cGCCGaCCAcGGCGGUgagcgcgccguUGAUCGCGuugGCCu -3'
miRNA:   3'- aUGGCgGGU-CUGCCG-----------ACUAGCGU---UGG- -5'
19044 5' -57.1 NC_004684.1 + 40175 0.68 0.537681
Target:  5'- aGCgGCCCgaugAGAaGGCUcugGAUCGCAccGCCg -3'
miRNA:   3'- aUGgCGGG----UCUgCCGA---CUAGCGU--UGG- -5'
19044 5' -57.1 NC_004684.1 + 17065 0.68 0.558696
Target:  5'- gGCCGCCCGccUGGCcGggCGC-ACCg -3'
miRNA:   3'- aUGGCGGGUcuGCCGaCuaGCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 2870 0.67 0.569291
Target:  5'- aGCCGCUgGGcgucauCGGUgccUGGUgGCAGCCg -3'
miRNA:   3'- aUGGCGGgUCu-----GCCG---ACUAgCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 44929 0.67 0.590621
Target:  5'- aACCgGCCUGGAgcgcgGGCggGAUCGCcGCCg -3'
miRNA:   3'- aUGG-CGGGUCUg----CCGa-CUAGCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 24623 0.67 0.590621
Target:  5'- gGCCGCUCAaacCGGg-GAUCGCAccgGCCa -3'
miRNA:   3'- aUGGCGGGUcu-GCCgaCUAGCGU---UGG- -5'
19044 5' -57.1 NC_004684.1 + 15154 0.67 0.612084
Target:  5'- cGCCGCUguGgcaccACGGcCUGAUCGacGCCg -3'
miRNA:   3'- aUGGCGGguC-----UGCC-GACUAGCguUGG- -5'
19044 5' -57.1 NC_004684.1 + 26840 0.66 0.633615
Target:  5'- -uUCGCCCAGcuccuggaggucGCGGa-GGUCGCcACCg -3'
miRNA:   3'- auGGCGGGUC------------UGCCgaCUAGCGuUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.