Results 81 - 100 of 199 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19044 | 5' | -57.1 | NC_004684.1 | + | 9141 | 0.68 | 0.537681 |
Target: 5'- gACCGCCuCGGcGCGGCaGGUgCgGCAACUg -3' miRNA: 3'- aUGGCGG-GUC-UGCCGaCUA-G-CGUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 46578 | 0.68 | 0.558696 |
Target: 5'- aACUcaGCCCAGucgucGCGGCUGGcgUUGCGuGCCg -3' miRNA: 3'- aUGG--CGGGUC-----UGCCGACU--AGCGU-UGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 54097 | 0.68 | 0.558696 |
Target: 5'- aGCUGCUCcGACGGCg---CGCAccaGCCa -3' miRNA: 3'- aUGGCGGGuCUGCCGacuaGCGU---UGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 47853 | 0.67 | 0.578869 |
Target: 5'- cACCGCCCGGcgcacccGCaGCUGG-CGUugAGCCa -3' miRNA: 3'- aUGGCGGGUC-------UGcCGACUaGCG--UUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 919 | 0.67 | 0.590621 |
Target: 5'- aGCCGCCaccggguGGCGGCgugGAgacaaCGCcGCCa -3' miRNA: 3'- aUGGCGGgu-----CUGCCGa--CUa----GCGuUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 15154 | 0.67 | 0.612084 |
Target: 5'- cGCCGCUguGgcaccACGGcCUGAUCGacGCCg -3' miRNA: 3'- aUGGCGGguC-----UGCC-GACUAGCguUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 26840 | 0.66 | 0.633615 |
Target: 5'- -uUCGCCCAGcuccuggaggucGCGGa-GGUCGCcACCg -3' miRNA: 3'- auGGCGGGUC------------UGCCgaCUAGCGuUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 32550 | 0.74 | 0.229843 |
Target: 5'- aACCGCCC--ACGGCUGcaugCGCAGCa -3' miRNA: 3'- aUGGCGGGucUGCCGACua--GCGUUGg -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 51998 | 0.78 | 0.12816 |
Target: 5'- gGCCGCCCcGAUGGCggccUCGUAGCCg -3' miRNA: 3'- aUGGCGGGuCUGCCGacu-AGCGUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 26698 | 0.66 | 0.680854 |
Target: 5'- cGCCGCCCAGcugaaguucgucgccACcuuGCUGGccgagCGCGACUg -3' miRNA: 3'- aUGGCGGGUC---------------UGc--CGACUa----GCGUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 49844 | 0.73 | 0.267513 |
Target: 5'- -cUCGUCCAGGCGGUccUGGUagGCGACCa -3' miRNA: 3'- auGGCGGGUCUGCCG--ACUAg-CGUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 37224 | 0.73 | 0.295302 |
Target: 5'- cGCCGCC--GACGGCguUGAUCGCccacuGGCCg -3' miRNA: 3'- aUGGCGGguCUGCCG--ACUAGCG-----UUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 37113 | 0.72 | 0.341106 |
Target: 5'- cGCCGCUCAGGuccucUGGCuUGA-CGUAGCCa -3' miRNA: 3'- aUGGCGGGUCU-----GCCG-ACUaGCGUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 33116 | 0.71 | 0.374386 |
Target: 5'- cGCCGCCCuugcuGACGGUggccugCGCAGuCCa -3' miRNA: 3'- aUGGCGGGu----CUGCCGacua--GCGUU-GG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 398 | 0.66 | 0.676582 |
Target: 5'- cACCGCCguGGCGggcaaGCUGG--GCGACUg -3' miRNA: 3'- aUGGCGGguCUGC-----CGACUagCGUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 3937 | 0.7 | 0.437687 |
Target: 5'- aUGCCGgaaCUGGGCGGC-GAagGCGACCa -3' miRNA: 3'- -AUGGCg--GGUCUGCCGaCUagCGUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 59467 | 0.66 | 0.687248 |
Target: 5'- gGCCuuGCCUGGGuucuccacCGGCUGGcUgGCGGCCa -3' miRNA: 3'- aUGG--CGGGUCU--------GCCGACU-AgCGUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 9918 | 0.69 | 0.476499 |
Target: 5'- gGCUGaCCgAGGCGG-UGAUUGUGGCCg -3' miRNA: 3'- aUGGC-GGgUCUGCCgACUAGCGUUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 58337 | 0.67 | 0.569291 |
Target: 5'- gGCgCGCCCGGugGcccuGCUGG-CGUuGCCg -3' miRNA: 3'- aUG-GCGGGUCugC----CGACUaGCGuUGG- -5' |
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19044 | 5' | -57.1 | NC_004684.1 | + | 706 | 0.68 | 0.558696 |
Target: 5'- aGCCGCCgguGGACGGCcUGG-CGCu-CCa -3' miRNA: 3'- aUGGCGGg--UCUGCCG-ACUaGCGuuGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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