miRNA display CGI


Results 21 - 40 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19044 5' -57.1 NC_004684.1 + 2452 0.66 0.665876
Target:  5'- -cCCGCCUGGGCGGCcagcucgGcgUGCcguACCa -3'
miRNA:   3'- auGGCGGGUCUGCCGa------CuaGCGu--UGG- -5'
19044 5' -57.1 NC_004684.1 + 1591 0.66 0.665876
Target:  5'- cACCuGCCCGGugcACGGCaucGGUCGcCGugCg -3'
miRNA:   3'- aUGG-CGGGUC---UGCCGa--CUAGC-GUugG- -5'
19044 5' -57.1 NC_004684.1 + 9576 0.66 0.665876
Target:  5'- cACCGCCgGGACcaGGCcgUGGUCGgGuucCCa -3'
miRNA:   3'- aUGGCGGgUCUG--CCG--ACUAGCgUu--GG- -5'
19044 5' -57.1 NC_004684.1 + 39328 0.66 0.665876
Target:  5'- uUGCCgcGCCCAGGcCGGUUGGcCGC--CCa -3'
miRNA:   3'- -AUGG--CGGGUCU-GCCGACUaGCGuuGG- -5'
19044 5' -57.1 NC_004684.1 + 60190 0.66 0.665876
Target:  5'- cGCgGCCUggcaGGAUGuGCUGAUCgGCGuugGCCu -3'
miRNA:   3'- aUGgCGGG----UCUGC-CGACUAG-CGU---UGG- -5'
19044 5' -57.1 NC_004684.1 + 24490 0.66 0.665876
Target:  5'- cUACCGCCgGgGGCGGUgc--CGCAggGCCg -3'
miRNA:   3'- -AUGGCGGgU-CUGCCGacuaGCGU--UGG- -5'
19044 5' -57.1 NC_004684.1 + 1517 0.66 0.665876
Target:  5'- cGCCGCgCUcaACGGCgacGA-CGCGACCc -3'
miRNA:   3'- aUGGCG-GGucUGCCGa--CUaGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 42821 0.66 0.664803
Target:  5'- gUGCuCGCCCGGcaugagcAUGGCcggGAcgcuaUCGCGGCCc -3'
miRNA:   3'- -AUG-GCGGGUC-------UGCCGa--CU-----AGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 16317 0.66 0.662657
Target:  5'- gGCCGCcggugauguaaugaCCAGcgaggaGCGGCUGG-CGCuGGCCg -3'
miRNA:   3'- aUGGCG--------------GGUC------UGCCGACUaGCG-UUGG- -5'
19044 5' -57.1 NC_004684.1 + 52384 0.66 0.655139
Target:  5'- aGCCGaUCCAGGCGGC-GGUCagGCAGu- -3'
miRNA:   3'- aUGGC-GGGUCUGCCGaCUAG--CGUUgg -5'
19044 5' -57.1 NC_004684.1 + 54983 0.66 0.655139
Target:  5'- gGCCGCCgaccacagCGGACGGCUcc-UGCGGCa -3'
miRNA:   3'- aUGGCGG--------GUCUGCCGAcuaGCGUUGg -5'
19044 5' -57.1 NC_004684.1 + 30613 0.66 0.655139
Target:  5'- cGCCGCcgaCCAGcguCGGCaccGggCGCGGCCc -3'
miRNA:   3'- aUGGCG---GGUCu--GCCGa--CuaGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 2452 0.66 0.648687
Target:  5'- cACCGCCCgccAGGC-GCUcaccgccgccaccugGGUCGCcGCCa -3'
miRNA:   3'- aUGGCGGG---UCUGcCGA---------------CUAGCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 43388 0.66 0.644382
Target:  5'- --aUGCCC-GACGGCccggagaacgGGUCGCcGCCg -3'
miRNA:   3'- augGCGGGuCUGCCGa---------CUAGCGuUGG- -5'
19044 5' -57.1 NC_004684.1 + 62489 0.66 0.644382
Target:  5'- gUGCCGCCgAGGcCGGUg----GCGACCa -3'
miRNA:   3'- -AUGGCGGgUCU-GCCGacuagCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 29867 0.66 0.644382
Target:  5'- cGCCGCCgCAGuCGuGCaucagGucGUCGUAACCg -3'
miRNA:   3'- aUGGCGG-GUCuGC-CGa----C--UAGCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 31188 0.66 0.644382
Target:  5'- cGCUGCgCAGcugcauccACGGCUGAggugccagCGCGucGCCa -3'
miRNA:   3'- aUGGCGgGUC--------UGCCGACUa-------GCGU--UGG- -5'
19044 5' -57.1 NC_004684.1 + 3818 0.66 0.644382
Target:  5'- cGCCGCgCAGGCcgauGGacCUGAUgGCAGCg -3'
miRNA:   3'- aUGGCGgGUCUG----CC--GACUAgCGUUGg -5'
19044 5' -57.1 NC_004684.1 + 28953 0.66 0.637922
Target:  5'- gACUGCCaCaaccuccgacuucgaGGugGaGCUGAgccugCGCGACCg -3'
miRNA:   3'- aUGGCGG-G---------------UCugC-CGACUa----GCGUUGG- -5'
19044 5' -57.1 NC_004684.1 + 42924 0.66 0.636845
Target:  5'- cGCCGCCaggugauacccuGACGGCgcuuguggcugcugUGGUUGUGGCCg -3'
miRNA:   3'- aUGGCGGgu----------CUGCCG--------------ACUAGCGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.