miRNA display CGI


Results 1 - 20 of 247 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19045 3' -63.6 NC_004684.1 + 49335 0.66 0.388705
Target:  5'- cGgCACCGGGCaGUCGuccucGCcuucGCCGCCGGu -3'
miRNA:   3'- -CgGUGGUCCGgCAGCc----CG----UGGCGGUC- -5'
19045 3' -63.6 NC_004684.1 + 7418 0.66 0.388705
Target:  5'- uGCgGCaAGGuCCGggugCGGcacgaGCGCCGCCAGc -3'
miRNA:   3'- -CGgUGgUCC-GGCa---GCC-----CGUGGCGGUC- -5'
19045 3' -63.6 NC_004684.1 + 15122 0.66 0.388705
Target:  5'- cGUCACCGGGaCGcUGGGCcugauccaCGCCAGc -3'
miRNA:   3'- -CGGUGGUCCgGCaGCCCGug------GCGGUC- -5'
19045 3' -63.6 NC_004684.1 + 18672 0.66 0.388705
Target:  5'- cGCCACCGGcaagcGCUGgcaGGGCcGCCGCa-- -3'
miRNA:   3'- -CGGUGGUC-----CGGCag-CCCG-UGGCGguc -5'
19045 3' -63.6 NC_004684.1 + 34713 0.66 0.388705
Target:  5'- gGUUGCCgAGGCCGUagccauGcCGCCGCCAGg -3'
miRNA:   3'- -CGGUGG-UCCGGCAgcc---C-GUGGCGGUC- -5'
19045 3' -63.6 NC_004684.1 + 61350 0.66 0.388705
Target:  5'- gGUCAgCUGGGCCG-CGaGGCGCUGgCGGc -3'
miRNA:   3'- -CGGU-GGUCCGGCaGC-CCGUGGCgGUC- -5'
19045 3' -63.6 NC_004684.1 + 61549 0.66 0.388705
Target:  5'- cGCaCGCCuGGUCcUCGaaCACCGCCAGc -3'
miRNA:   3'- -CG-GUGGuCCGGcAGCccGUGGCGGUC- -5'
19045 3' -63.6 NC_004684.1 + 26719 0.66 0.388705
Target:  5'- cGCCACCuugcuGGCCGagcgCGacuGGCGggGCCAGg -3'
miRNA:   3'- -CGGUGGu----CCGGCa---GC---CCGUggCGGUC- -5'
19045 3' -63.6 NC_004684.1 + 7260 0.66 0.388705
Target:  5'- cGCCACCgagcAGGCCGcCaGGCgagaccaguucAUCGCCGc -3'
miRNA:   3'- -CGGUGG----UCCGGCaGcCCG-----------UGGCGGUc -5'
19045 3' -63.6 NC_004684.1 + 24506 0.66 0.388705
Target:  5'- uGCCGCaGGGCCGcgCGuucGGCGgUGCCAu -3'
miRNA:   3'- -CGGUGgUCCGGCa-GC---CCGUgGCGGUc -5'
19045 3' -63.6 NC_004684.1 + 521 0.66 0.387867
Target:  5'- cGCCACCGGcGCUGaCGugcuGGCcagcgcggucgagGCCGCCAc -3'
miRNA:   3'- -CGGUGGUC-CGGCaGC----CCG-------------UGGCGGUc -5'
19045 3' -63.6 NC_004684.1 + 39834 0.66 0.387029
Target:  5'- cGCCACCGGGCCuccuaGUCGauuagcuccagcaGGCGgcugcgcacguccUUGCCAGc -3'
miRNA:   3'- -CGGUGGUCCGG-----CAGC-------------CCGU-------------GGCGGUC- -5'
19045 3' -63.6 NC_004684.1 + 46978 0.66 0.386193
Target:  5'- uGCCACCAGuacccgaugcggaaGgUGUucaacCGGGUGCCGUCGGg -3'
miRNA:   3'- -CGGUGGUC--------------CgGCA-----GCCCGUGGCGGUC- -5'
19045 3' -63.6 NC_004684.1 + 16394 0.66 0.386193
Target:  5'- aGCUACCGGGCgGUCaacuacaucugccaGGGguCgGCCu- -3'
miRNA:   3'- -CGGUGGUCCGgCAG--------------CCCguGgCGGuc -5'
19045 3' -63.6 NC_004684.1 + 4468 0.66 0.385357
Target:  5'- uGCgCGCgAGGCCGUCGuuGGCcgcuaccguaaccCCGCCGa -3'
miRNA:   3'- -CG-GUGgUCCGGCAGC--CCGu------------GGCGGUc -5'
19045 3' -63.6 NC_004684.1 + 22074 0.66 0.380372
Target:  5'- gGCUACCGGGacaCCG-CacGCGCCGCCAa -3'
miRNA:   3'- -CGGUGGUCC---GGCaGccCGUGGCGGUc -5'
19045 3' -63.6 NC_004684.1 + 41448 0.66 0.380372
Target:  5'- uGCCGCCGGuGUCaGUgGGGCugACC-CCGGc -3'
miRNA:   3'- -CGGUGGUC-CGG-CAgCCCG--UGGcGGUC- -5'
19045 3' -63.6 NC_004684.1 + 34642 0.66 0.380372
Target:  5'- cGCCACCAGGUCGgccgCGacGUACCGgUCGa -3'
miRNA:   3'- -CGGUGGUCCGGCa---GCc-CGUGGC-GGUc -5'
19045 3' -63.6 NC_004684.1 + 17070 0.66 0.380372
Target:  5'- cCCGCCuGGCCG--GGcGCACCGaCUGGg -3'
miRNA:   3'- cGGUGGuCCGGCagCC-CGUGGC-GGUC- -5'
19045 3' -63.6 NC_004684.1 + 14488 0.66 0.380372
Target:  5'- cGCCGCCGugcuGGCCGgacgcuccUGGGUGCaUGCCAc -3'
miRNA:   3'- -CGGUGGU----CCGGCa-------GCCCGUG-GCGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.