miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19046 3' -56.8 NC_004684.1 + 66122 0.69 0.477134
Target:  5'- cGUGCUGGcgaaguggucGCCGGUGUcguuGGUCCAgugaccggguugcuGGCAGa -3'
miRNA:   3'- -CGCGACU----------UGGCCGCA----CCAGGU--------------UCGUU- -5'
19046 3' -56.8 NC_004684.1 + 48370 0.69 0.480146
Target:  5'- aGUGCUu-GCCGGUGUGGUgCAcgaucAGCAc -3'
miRNA:   3'- -CGCGAcuUGGCCGCACCAgGU-----UCGUu -5'
19046 3' -56.8 NC_004684.1 + 60049 0.69 0.480146
Target:  5'- gGCGCgc-ACCGGCG-GGUugcacaCCGAGCAc -3'
miRNA:   3'- -CGCGacuUGGCCGCaCCA------GGUUCGUu -5'
19046 3' -56.8 NC_004684.1 + 16875 0.69 0.480146
Target:  5'- aGUGuCUGcGCCGGUGUGGUgcagaguuUCAAGCGc -3'
miRNA:   3'- -CGC-GACuUGGCCGCACCA--------GGUUCGUu -5'
19046 3' -56.8 NC_004684.1 + 54517 0.69 0.500457
Target:  5'- cGCGCUc-ACCGGCGggGGUaCGAGCGc -3'
miRNA:   3'- -CGCGAcuUGGCCGCa-CCAgGUUCGUu -5'
19046 3' -56.8 NC_004684.1 + 52496 0.69 0.500457
Target:  5'- cGCGUUGcGACCGGUGUGcauguggcaGUUCAAGCc- -3'
miRNA:   3'- -CGCGAC-UUGGCCGCAC---------CAGGUUCGuu -5'
19046 3' -56.8 NC_004684.1 + 61699 0.68 0.510754
Target:  5'- cGCGCUGcuccACCGGCGUcaGGaugCCAccGGCGu -3'
miRNA:   3'- -CGCGACu---UGGCCGCA--CCa--GGU--UCGUu -5'
19046 3' -56.8 NC_004684.1 + 17242 0.68 0.521138
Target:  5'- gGUGCUGAcgaaaugacGgCGGCGcUGGUCCu-GCAAc -3'
miRNA:   3'- -CGCGACU---------UgGCCGC-ACCAGGuuCGUU- -5'
19046 3' -56.8 NC_004684.1 + 8184 0.68 0.525315
Target:  5'- cGCGCUGGGCCagGcgcagcugaucaagcGCGUGGU-CGAGCAGc -3'
miRNA:   3'- -CGCGACUUGG--C---------------CGCACCAgGUUCGUU- -5'
19046 3' -56.8 NC_004684.1 + 55794 0.68 0.542144
Target:  5'- gGCGU--GACCGG-GUGGUCCGgugAGCGc -3'
miRNA:   3'- -CGCGacUUGGCCgCACCAGGU---UCGUu -5'
19046 3' -56.8 NC_004684.1 + 20846 0.68 0.55169
Target:  5'- aGCGC---ACCGGCGUcguucuuccgaccGGUgCAGGCAAg -3'
miRNA:   3'- -CGCGacuUGGCCGCA-------------CCAgGUUCGUU- -5'
19046 3' -56.8 NC_004684.1 + 5934 0.68 0.552753
Target:  5'- cGCGCUGGccACCGG-GcGGUCCAaccuGGCc- -3'
miRNA:   3'- -CGCGACU--UGGCCgCaCCAGGU----UCGuu -5'
19046 3' -56.8 NC_004684.1 + 528 0.67 0.562354
Target:  5'- gGCGCUGAcgugcugGCCaGCGcGGUCgAGGCc- -3'
miRNA:   3'- -CGCGACU-------UGGcCGCaCCAGgUUCGuu -5'
19046 3' -56.8 NC_004684.1 + 52251 0.67 0.563424
Target:  5'- -aGCUGcgcGCUGGCGUGGaUCAGGCc- -3'
miRNA:   3'- cgCGACu--UGGCCGCACCaGGUUCGuu -5'
19046 3' -56.8 NC_004684.1 + 30963 0.67 0.563424
Target:  5'- uCGCUGuggaaCGGCGUGGUC--GGCAc -3'
miRNA:   3'- cGCGACuug--GCCGCACCAGguUCGUu -5'
19046 3' -56.8 NC_004684.1 + 19674 0.67 0.573073
Target:  5'- cGCGCUcuACCGGCGcggcggcaaggccUGG-CCGAGCc- -3'
miRNA:   3'- -CGCGAcuUGGCCGC-------------ACCaGGUUCGuu -5'
19046 3' -56.8 NC_004684.1 + 21307 0.67 0.573073
Target:  5'- uGCGCUGGGCCaucaagcacgGGUuccUGGUCCAgccgcgcGGCAAg -3'
miRNA:   3'- -CGCGACUUGG----------CCGc--ACCAGGU-------UCGUU- -5'
19046 3' -56.8 NC_004684.1 + 46124 0.67 0.574148
Target:  5'- cGCGCgu-GCCGGgGUGGUugaCCuGGCGc -3'
miRNA:   3'- -CGCGacuUGGCCgCACCA---GGuUCGUu -5'
19046 3' -56.8 NC_004684.1 + 45274 0.67 0.574148
Target:  5'- cGCGCUGAGCUgccaGGCGcugcUGGUUCGcGCu- -3'
miRNA:   3'- -CGCGACUUGG----CCGC----ACCAGGUuCGuu -5'
19046 3' -56.8 NC_004684.1 + 56500 0.67 0.594646
Target:  5'- cGCGCcGAcccggguggucACCGGCGUcGGugaggucgaguucUCCGAGCGu -3'
miRNA:   3'- -CGCGaCU-----------UGGCCGCA-CC-------------AGGUUCGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.