miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19046 3' -56.8 NC_004684.1 + 5934 0.68 0.552753
Target:  5'- cGCGCUGGccACCGG-GcGGUCCAaccuGGCc- -3'
miRNA:   3'- -CGCGACU--UGGCCgCaCCAGGU----UCGuu -5'
19046 3' -56.8 NC_004684.1 + 66122 0.69 0.477134
Target:  5'- cGUGCUGGcgaaguggucGCCGGUGUcguuGGUCCAgugaccggguugcuGGCAGa -3'
miRNA:   3'- -CGCGACU----------UGGCCGCA----CCAGGU--------------UCGUU- -5'
19046 3' -56.8 NC_004684.1 + 16875 0.69 0.480146
Target:  5'- aGUGuCUGcGCCGGUGUGGUgcagaguuUCAAGCGc -3'
miRNA:   3'- -CGC-GACuUGGCCGCACCA--------GGUUCGUu -5'
19046 3' -56.8 NC_004684.1 + 48370 0.69 0.480146
Target:  5'- aGUGCUu-GCCGGUGUGGUgCAcgaucAGCAc -3'
miRNA:   3'- -CGCGAcuUGGCCGCACCAgGU-----UCGUu -5'
19046 3' -56.8 NC_004684.1 + 52496 0.69 0.500457
Target:  5'- cGCGUUGcGACCGGUGUGcauguggcaGUUCAAGCc- -3'
miRNA:   3'- -CGCGAC-UUGGCCGCAC---------CAGGUUCGuu -5'
19046 3' -56.8 NC_004684.1 + 54517 0.69 0.500457
Target:  5'- cGCGCUc-ACCGGCGggGGUaCGAGCGc -3'
miRNA:   3'- -CGCGAcuUGGCCGCa-CCAgGUUCGUu -5'
19046 3' -56.8 NC_004684.1 + 17242 0.68 0.521138
Target:  5'- gGUGCUGAcgaaaugacGgCGGCGcUGGUCCu-GCAAc -3'
miRNA:   3'- -CGCGACU---------UgGCCGC-ACCAGGuuCGUU- -5'
19046 3' -56.8 NC_004684.1 + 8184 0.68 0.525315
Target:  5'- cGCGCUGGGCCagGcgcagcugaucaagcGCGUGGU-CGAGCAGc -3'
miRNA:   3'- -CGCGACUUGG--C---------------CGCACCAgGUUCGUU- -5'
19046 3' -56.8 NC_004684.1 + 55794 0.68 0.542144
Target:  5'- gGCGU--GACCGG-GUGGUCCGgugAGCGc -3'
miRNA:   3'- -CGCGacUUGGCCgCACCAGGU---UCGUu -5'
19046 3' -56.8 NC_004684.1 + 25202 0.69 0.470143
Target:  5'- gGCGCUGGcACCGG-GUGGcUUCAccGGCAc -3'
miRNA:   3'- -CGCGACU-UGGCCgCACC-AGGU--UCGUu -5'
19046 3' -56.8 NC_004684.1 + 2102 0.69 0.460246
Target:  5'- gGCGCaGcacuacGGCgCGGCGUGGUCgGAGCu- -3'
miRNA:   3'- -CGCGaC------UUG-GCCGCACCAGgUUCGuu -5'
19046 3' -56.8 NC_004684.1 + 9886 0.7 0.440792
Target:  5'- cGCGCagGAGCaGGCcgccgacgaGUGGUCCGGGCu- -3'
miRNA:   3'- -CGCGa-CUUGgCCG---------CACCAGGUUCGuu -5'
19046 3' -56.8 NC_004684.1 + 43755 0.75 0.212896
Target:  5'- -gGCUGAcgguACCGGCGUGGUcaggCCGGGUAc -3'
miRNA:   3'- cgCGACU----UGGCCGCACCA----GGUUCGUu -5'
19046 3' -56.8 NC_004684.1 + 11713 0.73 0.289195
Target:  5'- aCGCUGAcGCCugcugGGCGuUGGUCCGGGUAGg -3'
miRNA:   3'- cGCGACU-UGG-----CCGC-ACCAGGUUCGUU- -5'
19046 3' -56.8 NC_004684.1 + 7574 0.72 0.326821
Target:  5'- gGCGCUGGugCGGC-UGGUgCGcGGCAAc -3'
miRNA:   3'- -CGCGACUugGCCGcACCAgGU-UCGUU- -5'
19046 3' -56.8 NC_004684.1 + 33074 0.71 0.376599
Target:  5'- uGCGCUGcucaaucuguCCGGCGUGGcgcugCCGAcGCAGg -3'
miRNA:   3'- -CGCGACuu--------GGCCGCACCa----GGUU-CGUU- -5'
19046 3' -56.8 NC_004684.1 + 55551 0.71 0.376599
Target:  5'- cGCGCcgcuggccgccgUGGcCCGGUGgccgggGGUCCAGGCAc -3'
miRNA:   3'- -CGCG------------ACUuGGCCGCa-----CCAGGUUCGUu -5'
19046 3' -56.8 NC_004684.1 + 45588 0.7 0.431241
Target:  5'- cGCGCgggugGAGCCGGacaGGUCCA-GCAc -3'
miRNA:   3'- -CGCGa----CUUGGCCgcaCCAGGUuCGUu -5'
19046 3' -56.8 NC_004684.1 + 43608 0.7 0.431241
Target:  5'- uGCGgUGAACagcccggccaCGGUGUGG-CCGAGCGc -3'
miRNA:   3'- -CGCgACUUG----------GCCGCACCaGGUUCGUu -5'
19046 3' -56.8 NC_004684.1 + 61538 0.7 0.440792
Target:  5'- gGCGCUGGcgugccGCUGGU-UGGUCCGGGUg- -3'
miRNA:   3'- -CGCGACU------UGGCCGcACCAGGUUCGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.