miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19046 5' -58.3 NC_004684.1 + 57073 0.66 0.580796
Target:  5'- gGCCUGcguugCGGCGCGCAc-AUCGGUGcGGg -3'
miRNA:   3'- -UGGGCa----GCCGCGCGUucUAGUCGC-UC- -5'
19046 5' -58.3 NC_004684.1 + 53873 0.67 0.570274
Target:  5'- aACUCGUCGGCGCaCGGGAUUcgauGCa-- -3'
miRNA:   3'- -UGGGCAGCCGCGcGUUCUAGu---CGcuc -5'
19046 5' -58.3 NC_004684.1 + 59446 0.67 0.559799
Target:  5'- uGCCCacCGGUGUGCGccGGUCGGCGGc -3'
miRNA:   3'- -UGGGcaGCCGCGCGUu-CUAGUCGCUc -5'
19046 5' -58.3 NC_004684.1 + 19778 0.67 0.559799
Target:  5'- uGCCCGcCgGGgGCGaCAAGAU-GGCGGGc -3'
miRNA:   3'- -UGGGCaG-CCgCGC-GUUCUAgUCGCUC- -5'
19046 5' -58.3 NC_004684.1 + 35981 0.67 0.559799
Target:  5'- cGCCaCGUUcuugGGCGCGUuggccuGGUUGGCGAGc -3'
miRNA:   3'- -UGG-GCAG----CCGCGCGuu----CUAGUCGCUC- -5'
19046 5' -58.3 NC_004684.1 + 6860 0.67 0.559799
Target:  5'- gGCaCCG--GGCGCgGCGAGAUCAGCc-- -3'
miRNA:   3'- -UG-GGCagCCGCG-CGUUCUAGUCGcuc -5'
19046 5' -58.3 NC_004684.1 + 8475 0.67 0.559799
Target:  5'- cCCCGgaggCGGgGUgggGCGGGGaCGGCGAGa -3'
miRNA:   3'- uGGGCa---GCCgCG---CGUUCUaGUCGCUC- -5'
19046 5' -58.3 NC_004684.1 + 66055 0.67 0.559799
Target:  5'- aGCgCGUCGGCGUGCGuGAUCccccAGCc-- -3'
miRNA:   3'- -UGgGCAGCCGCGCGUuCUAG----UCGcuc -5'
19046 5' -58.3 NC_004684.1 + 35014 0.67 0.556667
Target:  5'- gACgCGUgCGGCGCGCGaauGGGUCAccagcaaccccaacGCGAu -3'
miRNA:   3'- -UGgGCA-GCCGCGCGU---UCUAGU--------------CGCUc -5'
19046 5' -58.3 NC_004684.1 + 657 0.67 0.549378
Target:  5'- uACCgGgUGGUGCGCAAGAccgUCAcCGAGu -3'
miRNA:   3'- -UGGgCaGCCGCGCGUUCU---AGUcGCUC- -5'
19046 5' -58.3 NC_004684.1 + 54782 0.67 0.549378
Target:  5'- uGCCCGcaaGGUGCGCG-GcgUGGCGGGc -3'
miRNA:   3'- -UGGGCag-CCGCGCGUuCuaGUCGCUC- -5'
19046 5' -58.3 NC_004684.1 + 9313 0.67 0.549378
Target:  5'- uCCCGgucgagcugcaCGGUGCGCAcGGUCAGCu-- -3'
miRNA:   3'- uGGGCa----------GCCGCGCGUuCUAGUCGcuc -5'
19046 5' -58.3 NC_004684.1 + 20652 0.67 0.549378
Target:  5'- gACCCcagaGGUccgGCGCAAGAUCAGCc-- -3'
miRNA:   3'- -UGGGcag-CCG---CGCGUUCUAGUCGcuc -5'
19046 5' -58.3 NC_004684.1 + 39107 0.67 0.54834
Target:  5'- cACCCGgugacCGGguacgccUGCGCGGGGUCGGCa-- -3'
miRNA:   3'- -UGGGCa----GCC-------GCGCGUUCUAGUCGcuc -5'
19046 5' -58.3 NC_004684.1 + 30175 0.67 0.532835
Target:  5'- aACgCCGUCGGCG-GCGAGcUgguggccaccaaaccCGGCGAGu -3'
miRNA:   3'- -UG-GGCAGCCGCgCGUUCuA---------------GUCGCUC- -5'
19046 5' -58.3 NC_004684.1 + 30493 0.67 0.528727
Target:  5'- gACCCGagcguggggCGGCugGCGCuGGGGUCGGUGAa -3'
miRNA:   3'- -UGGGCa--------GCCG--CGCG-UUCUAGUCGCUc -5'
19046 5' -58.3 NC_004684.1 + 54210 0.67 0.518508
Target:  5'- gGCCUGcUCGGgGC-CGAGGUCGGCcAGc -3'
miRNA:   3'- -UGGGC-AGCCgCGcGUUCUAGUCGcUC- -5'
19046 5' -58.3 NC_004684.1 + 26410 0.68 0.508369
Target:  5'- cGCCac-CGGCGCGCu-GG-CAGCGGGg -3'
miRNA:   3'- -UGGgcaGCCGCGCGuuCUaGUCGCUC- -5'
19046 5' -58.3 NC_004684.1 + 6708 0.68 0.508369
Target:  5'- -aCCGUCGGCGCGagcaagccgAAGAaaGGCGAc -3'
miRNA:   3'- ugGGCAGCCGCGCg--------UUCUagUCGCUc -5'
19046 5' -58.3 NC_004684.1 + 65777 0.68 0.508369
Target:  5'- cGCCgGUgGGCGCGCGca--CGGCGAc -3'
miRNA:   3'- -UGGgCAgCCGCGCGUucuaGUCGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.