miRNA display CGI


Results 41 - 60 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19047 3' -59.3 NC_004684.1 + 65008 0.67 0.541606
Target:  5'- cGCCG-CACCCGGCGaaGGUGGccaugUCGa- -3'
miRNA:   3'- aCGGCuGUGGGCUGCg-CCACU-----AGCcc -5'
19047 3' -59.3 NC_004684.1 + 46432 0.67 0.535555
Target:  5'- -cCCGGCGCaucuggaacagcaguUCGGCGCGGUGGgccaGGGc -3'
miRNA:   3'- acGGCUGUG---------------GGCUGCGCCACUag--CCC- -5'
19047 3' -59.3 NC_004684.1 + 28063 0.67 0.531535
Target:  5'- gGUCGGC-CCCGGCG-GuGUGGcCGGGc -3'
miRNA:   3'- aCGGCUGuGGGCUGCgC-CACUaGCCC- -5'
19047 3' -59.3 NC_004684.1 + 46386 0.67 0.531535
Target:  5'- aUGCCGAUGuCgCUGGC-CGGgaUGGUCGGGu -3'
miRNA:   3'- -ACGGCUGU-G-GGCUGcGCC--ACUAGCCC- -5'
19047 3' -59.3 NC_004684.1 + 35309 0.67 0.531535
Target:  5'- gGCCaacgcuCACCCaGACGCGGUGcGUCGc- -3'
miRNA:   3'- aCGGcu----GUGGG-CUGCGCCAC-UAGCcc -5'
19047 3' -59.3 NC_004684.1 + 57507 0.67 0.521532
Target:  5'- cGUCGGCgGCCUGcuccuGCGCGGc-GUCGGGa -3'
miRNA:   3'- aCGGCUG-UGGGC-----UGCGCCacUAGCCC- -5'
19047 3' -59.3 NC_004684.1 + 27967 0.67 0.521532
Target:  5'- cGCCGAacaGCCCGAgagUGCGGaGuUCGGcGg -3'
miRNA:   3'- aCGGCUg--UGGGCU---GCGCCaCuAGCC-C- -5'
19047 3' -59.3 NC_004684.1 + 55949 0.67 0.521532
Target:  5'- gGCCGACG-CCGACGCcgcgcuccagcgGGUcAUCGGc -3'
miRNA:   3'- aCGGCUGUgGGCUGCG------------CCAcUAGCCc -5'
19047 3' -59.3 NC_004684.1 + 2097 0.67 0.521532
Target:  5'- cUGgUGGCGCagcacuaCGGCGCGGcgUGGUCGGa -3'
miRNA:   3'- -ACgGCUGUGg------GCUGCGCC--ACUAGCCc -5'
19047 3' -59.3 NC_004684.1 + 18374 0.67 0.520535
Target:  5'- cGCCGGUGgCCGAUcuguucaGCGG-GGUCGGGc -3'
miRNA:   3'- aCGGCUGUgGGCUG-------CGCCaCUAGCCC- -5'
19047 3' -59.3 NC_004684.1 + 42233 0.67 0.511603
Target:  5'- gUGUCGGCA-CCGGCGCGaagacGUGGU-GGGa -3'
miRNA:   3'- -ACGGCUGUgGGCUGCGC-----CACUAgCCC- -5'
19047 3' -59.3 NC_004684.1 + 11714 0.67 0.511603
Target:  5'- cGCUGACGCCUGcuGgGCGuUGGUcCGGGu -3'
miRNA:   3'- aCGGCUGUGGGC--UgCGCcACUA-GCCC- -5'
19047 3' -59.3 NC_004684.1 + 30537 0.67 0.511603
Target:  5'- cGCCGACGgcUCCGAccaguCGCGGgugucgaaccUGAUCGaGGu -3'
miRNA:   3'- aCGGCUGU--GGGCU-----GCGCC----------ACUAGC-CC- -5'
19047 3' -59.3 NC_004684.1 + 4782 0.68 0.501753
Target:  5'- cGCCagcaaGCGCCuCGGCGCGGUGGcCGa- -3'
miRNA:   3'- aCGGc----UGUGG-GCUGCGCCACUaGCcc -5'
19047 3' -59.3 NC_004684.1 + 63905 0.68 0.501753
Target:  5'- cUGgCGGCcacggugcgGCCCGGCGUGGcUGAgcUUGGGc -3'
miRNA:   3'- -ACgGCUG---------UGGGCUGCGCC-ACU--AGCCC- -5'
19047 3' -59.3 NC_004684.1 + 5751 0.68 0.501753
Target:  5'- cGCCGACACCuccgggggguuCGacuggcccaaguGCGUGGUGugcgggCGGGa -3'
miRNA:   3'- aCGGCUGUGG-----------GC------------UGCGCCACua----GCCC- -5'
19047 3' -59.3 NC_004684.1 + 26407 0.68 0.501753
Target:  5'- cGCCGcCA-CCGGCGCGcUGGcagCGGGg -3'
miRNA:   3'- aCGGCuGUgGGCUGCGCcACUa--GCCC- -5'
19047 3' -59.3 NC_004684.1 + 11428 0.68 0.491987
Target:  5'- cGCCGAUgACCCGcuggaGCGCGGc-GUCGGc -3'
miRNA:   3'- aCGGCUG-UGGGC-----UGCGCCacUAGCCc -5'
19047 3' -59.3 NC_004684.1 + 28231 0.68 0.491015
Target:  5'- gGCCGccCACCCGgagcacaGCGCGGUGGaccCGGc -3'
miRNA:   3'- aCGGCu-GUGGGC-------UGCGCCACUa--GCCc -5'
19047 3' -59.3 NC_004684.1 + 18166 0.68 0.48231
Target:  5'- gUGCCGACGCCCGGCcCGGcaccGAcCGa- -3'
miRNA:   3'- -ACGGCUGUGGGCUGcGCCa---CUaGCcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.