miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19047 5' -56.9 NC_004684.1 + 30767 0.79 0.132243
Target:  5'- aCCCCGACGagGUgGACGGGUGGGUGc -3'
miRNA:   3'- aGGGGCUGUggUAaCUGCUCACCCGC- -5'
19047 5' -56.9 NC_004684.1 + 9876 0.66 0.716927
Target:  5'- aUCCCGACgccgcgcaggagcagGCCGccGACGAGUgguccGGGCu -3'
miRNA:   3'- aGGGGCUG---------------UGGUaaCUGCUCA-----CCCGc -5'
19047 5' -56.9 NC_004684.1 + 11167 0.66 0.670743
Target:  5'- -aCCUGGcCGCCA---GCGAGUGGGUc -3'
miRNA:   3'- agGGGCU-GUGGUaacUGCUCACCCGc -5'
19047 5' -56.9 NC_004684.1 + 55131 0.67 0.660124
Target:  5'- cCCCCGGCgaaaugGCCGguugUGGCG-GUGGaGCc -3'
miRNA:   3'- aGGGGCUG------UGGUa---ACUGCuCACC-CGc -5'
19047 5' -56.9 NC_004684.1 + 66338 0.67 0.638822
Target:  5'- gUCCCggUGACGCCgg-GGCGGGcggccaGGGCGa -3'
miRNA:   3'- -AGGG--GCUGUGGuaaCUGCUCa-----CCCGC- -5'
19047 5' -56.9 NC_004684.1 + 51030 0.67 0.634557
Target:  5'- gUCCaCCGGCaggaugcggccaccGCCggUGACGAugcgcccGUGGGUGa -3'
miRNA:   3'- -AGG-GGCUG--------------UGGuaACUGCU-------CACCCGC- -5'
19047 5' -56.9 NC_004684.1 + 8110 0.67 0.628159
Target:  5'- cCCaCCGGCAgCAUUGACGAGgacgaccGCGu -3'
miRNA:   3'- aGG-GGCUGUgGUAACUGCUCacc----CGC- -5'
19047 5' -56.9 NC_004684.1 + 2807 0.67 0.628159
Target:  5'- uUCgCCGAgGCCAagaagcuccUGcGCGGGUGGGUGg -3'
miRNA:   3'- -AGgGGCUgUGGUa--------AC-UGCUCACCCGC- -5'
19047 5' -56.9 NC_004684.1 + 14909 0.68 0.600469
Target:  5'- cCUUCGugGCCAUggucccguggggguuUGACGAGUGuGCGc -3'
miRNA:   3'- aGGGGCugUGGUA---------------ACUGCUCACcCGC- -5'
19047 5' -56.9 NC_004684.1 + 3502 0.68 0.596221
Target:  5'- gCCgCCagGACGCCGcaaucgccGACGGGUGGGCc -3'
miRNA:   3'- aGG-GG--CUGUGGUaa------CUGCUCACCCGc -5'
19047 5' -56.9 NC_004684.1 + 61680 0.72 0.347403
Target:  5'- -gCCUGcACGCCAUUGGCGucggugccGUGGGCa -3'
miRNA:   3'- agGGGC-UGUGGUAACUGCu-------CACCCGc -5'
19047 5' -56.9 NC_004684.1 + 29174 0.7 0.463204
Target:  5'- gUUCCCGAaccuucaGCCGUgGACGcAGUGGGUc -3'
miRNA:   3'- -AGGGGCUg------UGGUAaCUGC-UCACCCGc -5'
19047 5' -56.9 NC_004684.1 + 34627 0.7 0.463204
Target:  5'- uUCCCCGACGagacccuugcCCGUcaGAUG-GUGGGCa -3'
miRNA:   3'- -AGGGGCUGU----------GGUAa-CUGCuCACCCGc -5'
19047 5' -56.9 NC_004684.1 + 56885 0.69 0.492706
Target:  5'- gCCCCG-CACC-UUGGCGAG-GaGGCc -3'
miRNA:   3'- aGGGGCuGUGGuAACUGCUCaC-CCGc -5'
19047 5' -56.9 NC_004684.1 + 46916 0.69 0.533317
Target:  5'- aUCCCCcagGACcgGCCAacGGCGGuGUGGGUGa -3'
miRNA:   3'- -AGGGG---CUG--UGGUaaCUGCU-CACCCGC- -5'
19047 5' -56.9 NC_004684.1 + 9290 0.68 0.564539
Target:  5'- gUUCCCGACGCC---GACG-GUGGcGCu -3'
miRNA:   3'- -AGGGGCUGUGGuaaCUGCuCACC-CGc -5'
19047 5' -56.9 NC_004684.1 + 11516 0.68 0.564539
Target:  5'- cUCCCGGCACCGcu--CG-GUGGGCc -3'
miRNA:   3'- aGGGGCUGUGGUaacuGCuCACCCGc -5'
19047 5' -56.9 NC_004684.1 + 35896 0.66 0.681328
Target:  5'- gUCCCCGACACU----GCauacGUGGGCu -3'
miRNA:   3'- -AGGGGCUGUGGuaacUGcu--CACCCGc -5'
19047 5' -56.9 NC_004684.1 + 55957 0.7 0.482773
Target:  5'- -gCCCGGucaGCUccggGUUGGCGaAGUGGGCGg -3'
miRNA:   3'- agGGGCUg--UGG----UAACUGC-UCACCCGC- -5'
19047 5' -56.9 NC_004684.1 + 39153 0.69 0.502732
Target:  5'- gUCCaCCG-CGCUGUgcucCGGGUGGGCGg -3'
miRNA:   3'- -AGG-GGCuGUGGUAacu-GCUCACCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.