miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19048 5' -62.7 NC_004684.1 + 10148 0.66 0.430775
Target:  5'- cGGU-GCCGCcCGCC-CaGGU--GGGGCg -3'
miRNA:   3'- -CCAuCGGCGuGCGGaG-CCGgaCCCCG- -5'
19048 5' -62.7 NC_004684.1 + 14802 0.66 0.430775
Target:  5'- --cGGCgGCGCGCUguccacCGGaCUgUGGGGCg -3'
miRNA:   3'- ccaUCGgCGUGCGGa-----GCC-GG-ACCCCG- -5'
19048 5' -62.7 NC_004684.1 + 48969 0.66 0.430775
Target:  5'- gGGUGGCCGgggcggGCGCgUCGGugcCCUGcuggccGGGCc -3'
miRNA:   3'- -CCAUCGGCg-----UGCGgAGCC---GGAC------CCCG- -5'
19048 5' -62.7 NC_004684.1 + 37712 0.66 0.430775
Target:  5'- ---cGCgCGCACGCg-CGGUCUGGucGGCc -3'
miRNA:   3'- ccauCG-GCGUGCGgaGCCGGACC--CCG- -5'
19048 5' -62.7 NC_004684.1 + 63497 0.66 0.428085
Target:  5'- --cAGCUGCgccuGCGCCagcagggCGGCCUGgcgucgcagcucgcGGGCg -3'
miRNA:   3'- ccaUCGGCG----UGCGGa------GCCGGAC--------------CCCG- -5'
19048 5' -62.7 NC_004684.1 + 19480 0.66 0.421847
Target:  5'- aGGUGGCCGaggcCGCCgaccgUGGCCUGc-GCu -3'
miRNA:   3'- -CCAUCGGCgu--GCGGa----GCCGGACccCG- -5'
19048 5' -62.7 NC_004684.1 + 6070 0.66 0.421847
Target:  5'- ---cGCCGCGCugguaGCCgauGCCgGGGGCg -3'
miRNA:   3'- ccauCGGCGUG-----CGGagcCGGaCCCCG- -5'
19048 5' -62.7 NC_004684.1 + 2689 0.66 0.421847
Target:  5'- cGGgcaCCGCAUccccgGCCU-GGCCggugccgGGGGCa -3'
miRNA:   3'- -CCaucGGCGUG-----CGGAgCCGGa------CCCCG- -5'
19048 5' -62.7 NC_004684.1 + 62988 0.66 0.42096
Target:  5'- cGGcGGCCaggacuuGCugGCgcgauagaccagCUCGGCCUccGGGGUc -3'
miRNA:   3'- -CCaUCGG-------CGugCG------------GAGCCGGA--CCCCG- -5'
19048 5' -62.7 NC_004684.1 + 54823 0.66 0.42096
Target:  5'- -aUAGCCGCcuGCGCCUgaCGugcgagcGCCUGGaGCg -3'
miRNA:   3'- ccAUCGGCG--UGCGGA--GC-------CGGACCcCG- -5'
19048 5' -62.7 NC_004684.1 + 4459 0.66 0.420075
Target:  5'- ---cGCCGCGCGCUggUCGGCUUcgucaccggccaGGGCc -3'
miRNA:   3'- ccauCGGCGUGCGG--AGCCGGAc-----------CCCG- -5'
19048 5' -62.7 NC_004684.1 + 55754 0.66 0.413031
Target:  5'- cGUGGCCG-AUGCCgaCGGUCaGGcGGCc -3'
miRNA:   3'- cCAUCGGCgUGCGGa-GCCGGaCC-CCG- -5'
19048 5' -62.7 NC_004684.1 + 60062 0.66 0.413031
Target:  5'- gGGUuGCacaccgaGCACGCgUCGGCCaUGGccgGGUu -3'
miRNA:   3'- -CCAuCGg------CGUGCGgAGCCGG-ACC---CCG- -5'
19048 5' -62.7 NC_004684.1 + 3725 0.66 0.407796
Target:  5'- cGGUAucaacgcuucgcaacGCuUGCACGUgcUGGCgUGGGGCg -3'
miRNA:   3'- -CCAU---------------CG-GCGUGCGgaGCCGgACCCCG- -5'
19048 5' -62.7 NC_004684.1 + 4779 0.66 0.404329
Target:  5'- cGUcGCCaGCaaGCGCCUCGGCgC-GGuGGCc -3'
miRNA:   3'- cCAuCGG-CG--UGCGGAGCCG-GaCC-CCG- -5'
19048 5' -62.7 NC_004684.1 + 43726 0.66 0.395744
Target:  5'- uGGUAuGCCuggacauagcGCAgCGCCUCGGCUgacGGuaccGGCg -3'
miRNA:   3'- -CCAU-CGG----------CGU-GCGGAGCCGGa--CC----CCG- -5'
19048 5' -62.7 NC_004684.1 + 50320 0.66 0.395744
Target:  5'- --cAGUCgGUGCGCC-CGGCCagGcGGGCg -3'
miRNA:   3'- ccaUCGG-CGUGCGGaGCCGGa-C-CCCG- -5'
19048 5' -62.7 NC_004684.1 + 54422 0.66 0.395744
Target:  5'- cGGUGuugccuGCCGC-CGCgUCGGCgggagcaccgGGGGUg -3'
miRNA:   3'- -CCAU------CGGCGuGCGgAGCCGga--------CCCCG- -5'
19048 5' -62.7 NC_004684.1 + 6806 0.66 0.395744
Target:  5'- --cGGCCaCuacgACGCCgUCGGCCUGGaGGa -3'
miRNA:   3'- ccaUCGGcG----UGCGG-AGCCGGACC-CCg -5'
19048 5' -62.7 NC_004684.1 + 61324 0.66 0.395744
Target:  5'- --gGGCCGC-CGcCCUCGGCggcguaGGuGGCg -3'
miRNA:   3'- ccaUCGGCGuGC-GGAGCCGga----CC-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.