miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19049 3' -53.7 NC_004684.1 + 39863 0.67 0.798965
Target:  5'- aCAGGCGCUUGgcgcGCAUCaG-CUCgcccaGGCCg -3'
miRNA:   3'- -GUUCGCGGACa---UGUAGcCuGAG-----UCGG- -5'
19049 3' -53.7 NC_004684.1 + 36773 0.67 0.798965
Target:  5'- --cGCGCCcgGUGCcgacgcugGUCGGcggcgGCUCGGUCa -3'
miRNA:   3'- guuCGCGGa-CAUG--------UAGCC-----UGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 61402 0.67 0.769291
Target:  5'- --uGCGCCUGaGCcaggcCGGgacuucGCUCGGCCg -3'
miRNA:   3'- guuCGCGGACaUGua---GCC------UGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 47882 0.67 0.773328
Target:  5'- uGAGCGUCUGgaucaggucguagGCAggccacggucggCGGcCUCGGCCa -3'
miRNA:   3'- gUUCGCGGACa------------UGUa-----------GCCuGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 51198 0.67 0.779338
Target:  5'- --cGCGCCcuggccGUACAUCGuGGC-CAGCa -3'
miRNA:   3'- guuCGCGGa-----CAUGUAGC-CUGaGUCGg -5'
19049 3' -53.7 NC_004684.1 + 26286 0.67 0.798965
Target:  5'- -cGGUGaCCUcGgcCAUCGGuacgcaGCUCGGCCa -3'
miRNA:   3'- guUCGC-GGA-CauGUAGCC------UGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 37584 0.67 0.769291
Target:  5'- gAGGUGCCcggcaucgGUACcgugCGGGCcCGGCCg -3'
miRNA:   3'- gUUCGCGGa-------CAUGua--GCCUGaGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 21058 0.67 0.769291
Target:  5'- aCGGGUGCCgGUGCugacCGGGCaccUgGGCCg -3'
miRNA:   3'- -GUUCGCGGaCAUGua--GCCUG---AgUCGG- -5'
19049 3' -53.7 NC_004684.1 + 6004 0.67 0.759102
Target:  5'- uCAGGCGCac---CAUCGGACgcggUGGCCu -3'
miRNA:   3'- -GUUCGCGgacauGUAGCCUGa---GUCGG- -5'
19049 3' -53.7 NC_004684.1 + 36290 0.67 0.769291
Target:  5'- -cAGCGCCUGcgcgGCGUCcuGC-CAGCCc -3'
miRNA:   3'- guUCGCGGACa---UGUAGccUGaGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 62830 0.67 0.759102
Target:  5'- -cAGCGCCUcgaugGCcUCGGcaaUCAGCCa -3'
miRNA:   3'- guUCGCGGAca---UGuAGCCug-AGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 23254 0.67 0.788251
Target:  5'- gCGAGCGCCUgGUGCucaacgacgCGGGCgaggagcgcguggUCGGCa -3'
miRNA:   3'- -GUUCGCGGA-CAUGua-------GCCUG-------------AGUCGg -5'
19049 3' -53.7 NC_004684.1 + 11443 0.68 0.748784
Target:  5'- gGAGCGCg---GCGUCGGcgUCGGCCu -3'
miRNA:   3'- gUUCGCGgacaUGUAGCCugAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 44626 0.68 0.70644
Target:  5'- gGAGCGCCgggGggag-CGGguACUCGGCCc -3'
miRNA:   3'- gUUCGCGGa--CauguaGCC--UGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 31750 0.68 0.727803
Target:  5'- -cGGC-CCUGUACGUCGGcCUgUAcGCCa -3'
miRNA:   3'- guUCGcGGACAUGUAGCCuGA-GU-CGG- -5'
19049 3' -53.7 NC_004684.1 + 46184 0.68 0.70644
Target:  5'- gAAGCGCCUGcGCGU---GCUUGGCCc -3'
miRNA:   3'- gUUCGCGGACaUGUAgccUGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 33500 0.68 0.727803
Target:  5'- -cGGCGgcCCUGUACucgCGGGCgguggCGGCUa -3'
miRNA:   3'- guUCGC--GGACAUGua-GCCUGa----GUCGG- -5'
19049 3' -53.7 NC_004684.1 + 47824 0.68 0.738347
Target:  5'- --cGUGCCUGcuCGUCGGAC-CcGCCu -3'
miRNA:   3'- guuCGCGGACauGUAGCCUGaGuCGG- -5'
19049 3' -53.7 NC_004684.1 + 52102 0.68 0.727803
Target:  5'- --cGCGCCaGccaaACGUCGGGCUggUGGCCa -3'
miRNA:   3'- guuCGCGGaCa---UGUAGCCUGA--GUCGG- -5'
19049 3' -53.7 NC_004684.1 + 59917 0.68 0.748784
Target:  5'- -cGGCcCUUGUcaGCGUCGGugUcCGGCCc -3'
miRNA:   3'- guUCGcGGACA--UGUAGCCugA-GUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.