miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19049 3' -53.7 NC_004684.1 + 31750 0.68 0.727803
Target:  5'- -cGGC-CCUGUACGUCGGcCUgUAcGCCa -3'
miRNA:   3'- guUCGcGGACAUGUAGCCuGA-GU-CGG- -5'
19049 3' -53.7 NC_004684.1 + 33500 0.68 0.727803
Target:  5'- -cGGCGgcCCUGUACucgCGGGCgguggCGGCUa -3'
miRNA:   3'- guUCGC--GGACAUGua-GCCUGa----GUCGG- -5'
19049 3' -53.7 NC_004684.1 + 47824 0.68 0.738347
Target:  5'- --cGUGCCUGcuCGUCGGAC-CcGCCu -3'
miRNA:   3'- guuCGCGGACauGUAGCCUGaGuCGG- -5'
19049 3' -53.7 NC_004684.1 + 11633 0.68 0.748784
Target:  5'- -cGGcCGCCUGacCGUCGGcaUCGGCCa -3'
miRNA:   3'- guUC-GCGGACauGUAGCCugAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 59917 0.68 0.748784
Target:  5'- -cGGCcCUUGUcaGCGUCGGugUcCGGCCc -3'
miRNA:   3'- guUCGcGGACA--UGUAGCCugA-GUCGG- -5'
19049 3' -53.7 NC_004684.1 + 40653 0.69 0.651955
Target:  5'- uGGGgGCCUGgccccgccaGUCGcGCUCGGCCa -3'
miRNA:   3'- gUUCgCGGACaug------UAGCcUGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 58100 0.69 0.695644
Target:  5'- -uAGCGCCaccGUcgGCGUCGGGaacucgacaUCGGCCa -3'
miRNA:   3'- guUCGCGGa--CA--UGUAGCCUg--------AGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 56882 0.69 0.695644
Target:  5'- --uGCGCCUGacCGUCGGcggcccaguGCgUCGGCCg -3'
miRNA:   3'- guuCGCGGACauGUAGCC---------UG-AGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 14378 0.69 0.651955
Target:  5'- aGAGCGCgCUGgugGCGcUGGACgacgguuacUCGGCCa -3'
miRNA:   3'- gUUCGCG-GACa--UGUaGCCUG---------AGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 34293 0.69 0.662931
Target:  5'- gCGAGCGCCU--GCGUCGGcagcGC-CAcGCCg -3'
miRNA:   3'- -GUUCGCGGAcaUGUAGCC----UGaGU-CGG- -5'
19049 3' -53.7 NC_004684.1 + 16458 0.69 0.651955
Target:  5'- --uGCGCCUGgACGaggcCGGGCUgucCGGCCa -3'
miRNA:   3'- guuCGCGGACaUGUa---GCCUGA---GUCGG- -5'
19049 3' -53.7 NC_004684.1 + 8090 0.69 0.651955
Target:  5'- gGAGCGCCcGUgaGCAagGGGCaaCGGCCu -3'
miRNA:   3'- gUUCGCGGaCA--UGUagCCUGa-GUCGG- -5'
19049 3' -53.7 NC_004684.1 + 62391 0.69 0.684786
Target:  5'- aCAGGUccaccuucGCCcgGUACGUcgCGGAgUCGGCCu -3'
miRNA:   3'- -GUUCG--------CGGa-CAUGUA--GCCUgAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 43636 0.69 0.667314
Target:  5'- cCGAGCGCg-GUGaguuCGUCGGACcaaacguccuggaacUCAGCCc -3'
miRNA:   3'- -GUUCGCGgaCAU----GUAGCCUG---------------AGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 1893 0.69 0.673878
Target:  5'- gCGAGCaCCUGgagACggUGGccaaACUCAGCCa -3'
miRNA:   3'- -GUUCGcGGACa--UGuaGCC----UGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 60822 0.7 0.586064
Target:  5'- cCAGGUGCCgg-ACA-CGGACUCA-CCg -3'
miRNA:   3'- -GUUCGCGGacaUGUaGCCUGAGUcGG- -5'
19049 3' -53.7 NC_004684.1 + 64943 0.7 0.618959
Target:  5'- uGAGCGCCUGg----CGGGCggUGGCCc -3'
miRNA:   3'- gUUCGCGGACauguaGCCUGa-GUCGG- -5'
19049 3' -53.7 NC_004684.1 + 2039 0.7 0.586064
Target:  5'- -cAGCGcCCUGUuCGU-GGACUaCGGCCa -3'
miRNA:   3'- guUCGC-GGACAuGUAgCCUGA-GUCGG- -5'
19049 3' -53.7 NC_004684.1 + 54844 0.7 0.640961
Target:  5'- gCGAGCGCCUGgagcgcgucgAUGUCGGugggCAGCUc -3'
miRNA:   3'- -GUUCGCGGACa---------UGUAGCCuga-GUCGG- -5'
19049 3' -53.7 NC_004684.1 + 21097 0.71 0.553514
Target:  5'- cCAAGCGCC---GCAaCGcGCUCGGCCg -3'
miRNA:   3'- -GUUCGCGGacaUGUaGCcUGAGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.