Results 61 - 71 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
19049 | 3' | -53.7 | NC_004684.1 | + | 21097 | 0.71 | 0.553514 |
Target: 5'- cCAAGCGCC---GCAaCGcGCUCGGCCg -3' miRNA: 3'- -GUUCGCGGacaUGUaGCcUGAGUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 64012 | 0.72 | 0.499561 |
Target: 5'- cCAGGCGCUUGccGCGcuugaccUCGGugUCGGCg -3' miRNA: 3'- -GUUCGCGGACa-UGU-------AGCCugAGUCGg -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 66646 | 0.72 | 0.469935 |
Target: 5'- gGAGCGCCgccaggGCGUCGGugUC-GUCg -3' miRNA: 3'- gUUCGCGGaca---UGUAGCCugAGuCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 51115 | 0.72 | 0.490275 |
Target: 5'- gAAGCGCC---GCGUCGGGCcCGGCg -3' miRNA: 3'- gUUCGCGGacaUGUAGCCUGaGUCGg -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 58778 | 0.72 | 0.480052 |
Target: 5'- -cGGUGCCgGUGCAcCGGGCUUguucgaGGCCa -3' miRNA: 3'- guUCGCGGaCAUGUaGCCUGAG------UCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 39673 | 0.72 | 0.480052 |
Target: 5'- --cGUGCCUcGUGC-UCGcGCUCGGCCg -3' miRNA: 3'- guuCGCGGA-CAUGuAGCcUGAGUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 27849 | 0.73 | 0.456947 |
Target: 5'- cCGAGCGCgCUGUGCAcgcaggagugccggUCGcuGCUCGGCUa -3' miRNA: 3'- -GUUCGCG-GACAUGU--------------AGCc-UGAGUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 20478 | 0.73 | 0.450034 |
Target: 5'- cCAAGCGCa---ACGUCGGACUCGacaccaucacGCCg -3' miRNA: 3'- -GUUCGCGgacaUGUAGCCUGAGU----------CGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 25856 | 0.73 | 0.430605 |
Target: 5'- -cGGCgGCCUGUuCAaCGGcCUCGGCCa -3' miRNA: 3'- guUCG-CGGACAuGUaGCCuGAGUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 8874 | 0.74 | 0.384275 |
Target: 5'- uGAGCGCCUGc---UgGGACUCGGCUc -3' miRNA: 3'- gUUCGCGGACauguAgCCUGAGUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 27541 | 1.13 | 0.000992 |
Target: 5'- cCAAGCGCCUGUACAUCGGACUCAGCCa -3' miRNA: 3'- -GUUCGCGGACAUGUAGCCUGAGUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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