Results 21 - 40 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19049 | 3' | -53.7 | NC_004684.1 | + | 53549 | 0.68 | 0.70644 |
Target: 5'- --cGUGCCUGgauuUCGGACUCccagAGCUg -3' miRNA: 3'- guuCGCGGACauguAGCCUGAG----UCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 52102 | 0.68 | 0.727803 |
Target: 5'- --cGCGCCaGccaaACGUCGGGCUggUGGCCa -3' miRNA: 3'- guuCGCGGaCa---UGUAGCCUGA--GUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 51198 | 0.67 | 0.779338 |
Target: 5'- --cGCGCCcuggccGUACAUCGuGGC-CAGCa -3' miRNA: 3'- guuCGCGGa-----CAUGUAGC-CUGaGUCGg -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 51115 | 0.72 | 0.490275 |
Target: 5'- gAAGCGCC---GCGUCGGGCcCGGCg -3' miRNA: 3'- gUUCGCGGacaUGUAGCCUGaGUCGg -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 49650 | 0.66 | 0.844803 |
Target: 5'- gGAGCaCCgaccACGgcgUGGACUCGGCCc -3' miRNA: 3'- gUUCGcGGaca-UGUa--GCCUGAGUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 49101 | 0.66 | 0.817895 |
Target: 5'- gCAGGUGCCacagGUcgcCGUCGGcgUCGGCCu -3' miRNA: 3'- -GUUCGCGGa---CAu--GUAGCCugAGUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 47882 | 0.67 | 0.773328 |
Target: 5'- uGAGCGUCUGgaucaggucguagGCAggccacggucggCGGcCUCGGCCa -3' miRNA: 3'- gUUCGCGGACa------------UGUa-----------GCCuGAGUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 47824 | 0.68 | 0.738347 |
Target: 5'- --cGUGCCUGcuCGUCGGAC-CcGCCu -3' miRNA: 3'- guuCGCGGACauGUAGCCUGaGuCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 46353 | 0.68 | 0.70644 |
Target: 5'- gGAGCGUg-GUGguCGUCGuGCUCGGCCa -3' miRNA: 3'- gUUCGCGgaCAU--GUAGCcUGAGUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 46184 | 0.68 | 0.70644 |
Target: 5'- gAAGCGCCUGcGCGU---GCUUGGCCc -3' miRNA: 3'- gUUCGCGGACaUGUAgccUGAGUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 44626 | 0.68 | 0.70644 |
Target: 5'- gGAGCGCCgggGggag-CGGguACUCGGCCc -3' miRNA: 3'- gUUCGCGGa--CauguaGCC--UGAGUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 43968 | 0.66 | 0.853338 |
Target: 5'- cCGAGCaucaGCC-GUGCG-CGGGCguaccCGGCCa -3' miRNA: 3'- -GUUCG----CGGaCAUGUaGCCUGa----GUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 43636 | 0.69 | 0.667314 |
Target: 5'- cCGAGCGCg-GUGaguuCGUCGGACcaaacguccuggaacUCAGCCc -3' miRNA: 3'- -GUUCGCGgaCAU----GUAGCCUG---------------AGUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 41266 | 0.66 | 0.817895 |
Target: 5'- gAGGUGCUgGUGCgGUCGGACagcGCCg -3' miRNA: 3'- gUUCGCGGaCAUG-UAGCCUGaguCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 40653 | 0.69 | 0.651955 |
Target: 5'- uGGGgGCCUGgccccgccaGUCGcGCUCGGCCa -3' miRNA: 3'- gUUCgCGGACaug------UAGCcUGAGUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 39863 | 0.67 | 0.798965 |
Target: 5'- aCAGGCGCUUGgcgcGCAUCaG-CUCgcccaGGCCg -3' miRNA: 3'- -GUUCGCGGACa---UGUAGcCuGAG-----UCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 39806 | 0.66 | 0.853338 |
Target: 5'- --uGCGCCgGUccAUGUCGGacagguGCUUGGCCa -3' miRNA: 3'- guuCGCGGaCA--UGUAGCC------UGAGUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 39673 | 0.72 | 0.480052 |
Target: 5'- --cGUGCCUcGUGC-UCGcGCUCGGCCg -3' miRNA: 3'- guuCGCGGA-CAUGuAGCcUGAGUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 37584 | 0.67 | 0.769291 |
Target: 5'- gAGGUGCCcggcaucgGUACcgugCGGGCcCGGCCg -3' miRNA: 3'- gUUCGCGGa-------CAUGua--GCCUGaGUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 36773 | 0.67 | 0.798965 |
Target: 5'- --cGCGCCcgGUGCcgacgcugGUCGGcggcgGCUCGGUCa -3' miRNA: 3'- guuCGCGGa-CAUG--------UAGCC-----UGAGUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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