miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19049 3' -53.7 NC_004684.1 + 36290 0.67 0.769291
Target:  5'- -cAGCGCCUGcgcgGCGUCcuGC-CAGCCc -3'
miRNA:   3'- guUCGCGGACa---UGUAGccUGaGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 35424 0.68 0.752926
Target:  5'- -cAGCGCggagguggugaucggCUG-GCGUCGGAUUgCGGCCa -3'
miRNA:   3'- guUCGCG---------------GACaUGUAGCCUGA-GUCGG- -5'
19049 3' -53.7 NC_004684.1 + 34293 0.69 0.662931
Target:  5'- gCGAGCGCCU--GCGUCGGcagcGC-CAcGCCg -3'
miRNA:   3'- -GUUCGCGGAcaUGUAGCC----UGaGU-CGG- -5'
19049 3' -53.7 NC_004684.1 + 33620 0.67 0.789234
Target:  5'- -cAGCGCCggauCGUCGGGCggcuaccucgUCAGCg -3'
miRNA:   3'- guUCGCGGacauGUAGCCUG----------AGUCGg -5'
19049 3' -53.7 NC_004684.1 + 33500 0.68 0.727803
Target:  5'- -cGGCGgcCCUGUACucgCGGGCgguggCGGCUa -3'
miRNA:   3'- guUCGC--GGACAUGua-GCCUGa----GUCGG- -5'
19049 3' -53.7 NC_004684.1 + 32278 0.66 0.827072
Target:  5'- -cGGCGaagagGUGCAUUGGcGCUCGGCg -3'
miRNA:   3'- guUCGCgga--CAUGUAGCC-UGAGUCGg -5'
19049 3' -53.7 NC_004684.1 + 31750 0.68 0.727803
Target:  5'- -cGGC-CCUGUACGUCGGcCUgUAcGCCa -3'
miRNA:   3'- guUCGcGGACAUGUAGCCuGA-GU-CGG- -5'
19049 3' -53.7 NC_004684.1 + 27849 0.73 0.456947
Target:  5'- cCGAGCGCgCUGUGCAcgcaggagugccggUCGcuGCUCGGCUa -3'
miRNA:   3'- -GUUCGCG-GACAUGU--------------AGCc-UGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 27541 1.13 0.000992
Target:  5'- cCAAGCGCCUGUACAUCGGACUCAGCCa -3'
miRNA:   3'- -GUUCGCGGACAUGUAGCCUGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 26286 0.67 0.798965
Target:  5'- -cGGUGaCCUcGgcCAUCGGuacgcaGCUCGGCCa -3'
miRNA:   3'- guUCGC-GGA-CauGUAGCC------UGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 25856 0.73 0.430605
Target:  5'- -cGGCgGCCUGUuCAaCGGcCUCGGCCa -3'
miRNA:   3'- guUCG-CGGACAuGUaGCCuGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 23254 0.67 0.788251
Target:  5'- gCGAGCGCCUgGUGCucaacgacgCGGGCgaggagcgcguggUCGGCa -3'
miRNA:   3'- -GUUCGCGGA-CAUGua-------GCCUG-------------AGUCGg -5'
19049 3' -53.7 NC_004684.1 + 21097 0.71 0.553514
Target:  5'- cCAAGCGCC---GCAaCGcGCUCGGCCg -3'
miRNA:   3'- -GUUCGCGGacaUGUaGCcUGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 21058 0.67 0.769291
Target:  5'- aCGGGUGCCgGUGCugacCGGGCaccUgGGCCg -3'
miRNA:   3'- -GUUCGCGGaCAUGua--GCCUG---AgUCGG- -5'
19049 3' -53.7 NC_004684.1 + 20739 0.66 0.836045
Target:  5'- gGAGCGCCUGgagGCAccgCaGGCgguGCCg -3'
miRNA:   3'- gUUCGCGGACa--UGUa--GcCUGaguCGG- -5'
19049 3' -53.7 NC_004684.1 + 20478 0.73 0.450034
Target:  5'- cCAAGCGCa---ACGUCGGACUCGacaccaucacGCCg -3'
miRNA:   3'- -GUUCGCGgacaUGUAGCCUGAGU----------CGG- -5'
19049 3' -53.7 NC_004684.1 + 16458 0.69 0.651955
Target:  5'- --uGCGCCUGgACGaggcCGGGCUgucCGGCCa -3'
miRNA:   3'- guuCGCGGACaUGUa---GCCUGA---GUCGG- -5'
19049 3' -53.7 NC_004684.1 + 15738 0.66 0.827072
Target:  5'- gCAAGgGCCUcGUGCA-CGGcCagCAGCUg -3'
miRNA:   3'- -GUUCgCGGA-CAUGUaGCCuGa-GUCGG- -5'
19049 3' -53.7 NC_004684.1 + 14378 0.69 0.651955
Target:  5'- aGAGCGCgCUGgugGCGcUGGACgacgguuacUCGGCCa -3'
miRNA:   3'- gUUCGCG-GACa--UGUaGCCUG---------AGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 13063 0.66 0.844803
Target:  5'- --cGCG-CUGUGCuaugcccUCGGAaugUCAGCCg -3'
miRNA:   3'- guuCGCgGACAUGu------AGCCUg--AGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.