miRNA display CGI


Results 61 - 71 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19049 3' -53.7 NC_004684.1 + 11633 0.68 0.748784
Target:  5'- -cGGcCGCCUGacCGUCGGcaUCGGCCa -3'
miRNA:   3'- guUC-GCGGACauGUAGCCugAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 11443 0.68 0.748784
Target:  5'- gGAGCGCg---GCGUCGGcgUCGGCCu -3'
miRNA:   3'- gUUCGCGgacaUGUAGCCugAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 9464 0.66 0.827072
Target:  5'- cCGGGCGCUgGaGCuggCGGGCaagcgCAGCCg -3'
miRNA:   3'- -GUUCGCGGaCaUGua-GCCUGa----GUCGG- -5'
19049 3' -53.7 NC_004684.1 + 8874 0.74 0.384275
Target:  5'- uGAGCGCCUGc---UgGGACUCGGCUc -3'
miRNA:   3'- gUUCGCGGACauguAgCCUGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 8680 0.66 0.827072
Target:  5'- cCAGGUGCCUGUggccguGCGUgaGGuCUguUAGCCg -3'
miRNA:   3'- -GUUCGCGGACA------UGUAg-CCuGA--GUCGG- -5'
19049 3' -53.7 NC_004684.1 + 8090 0.69 0.651955
Target:  5'- gGAGCGCCcGUgaGCAagGGGCaaCGGCCu -3'
miRNA:   3'- gUUCGCGGaCA--UGUagCCUGa-GUCGG- -5'
19049 3' -53.7 NC_004684.1 + 6004 0.67 0.759102
Target:  5'- uCAGGCGCac---CAUCGGACgcggUGGCCu -3'
miRNA:   3'- -GUUCGCGgacauGUAGCCUGa---GUCGG- -5'
19049 3' -53.7 NC_004684.1 + 4892 0.66 0.844803
Target:  5'- uCAGGCgGCCUGgucgcCAcCGGcCUCGGCg -3'
miRNA:   3'- -GUUCG-CGGACau---GUaGCCuGAGUCGg -5'
19049 3' -53.7 NC_004684.1 + 4229 0.67 0.798965
Target:  5'- gCAuGCGCCUGcGCGgcgcgcaGGAgccgcaCUCGGCCa -3'
miRNA:   3'- -GUuCGCGGACaUGUag-----CCU------GAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 2039 0.7 0.586064
Target:  5'- -cAGCGcCCUGUuCGU-GGACUaCGGCCa -3'
miRNA:   3'- guUCGC-GGACAuGUAgCCUGA-GUCGG- -5'
19049 3' -53.7 NC_004684.1 + 1893 0.69 0.673878
Target:  5'- gCGAGCaCCUGgagACggUGGccaaACUCAGCCa -3'
miRNA:   3'- -GUUCGcGGACa--UGuaGCC----UGAGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.