miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19049 3' -53.7 NC_004684.1 + 51115 0.72 0.490275
Target:  5'- gAAGCGCC---GCGUCGGGCcCGGCg -3'
miRNA:   3'- gUUCGCGGacaUGUAGCCUGaGUCGg -5'
19049 3' -53.7 NC_004684.1 + 64447 0.66 0.827072
Target:  5'- --cGCGCCgaugGCcUCGGuGCUCGGCa -3'
miRNA:   3'- guuCGCGGaca-UGuAGCC-UGAGUCGg -5'
19049 3' -53.7 NC_004684.1 + 62830 0.67 0.759102
Target:  5'- -cAGCGCCUcgaugGCcUCGGcaaUCAGCCa -3'
miRNA:   3'- guUCGCGGAca---UGuAGCCug-AGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 58778 0.72 0.480052
Target:  5'- -cGGUGCCgGUGCAcCGGGCUUguucgaGGCCa -3'
miRNA:   3'- guUCGCGGaCAUGUaGCCUGAG------UCGG- -5'
19049 3' -53.7 NC_004684.1 + 53680 0.66 0.853338
Target:  5'- -cAGCGCCUGg--GUCGGGaugaucUUCGGCg -3'
miRNA:   3'- guUCGCGGACaugUAGCCU------GAGUCGg -5'
19049 3' -53.7 NC_004684.1 + 66646 0.72 0.469935
Target:  5'- gGAGCGCCgccaggGCGUCGGugUC-GUCg -3'
miRNA:   3'- gUUCGCGGaca---UGUAGCCugAGuCGG- -5'
19049 3' -53.7 NC_004684.1 + 27541 1.13 0.000992
Target:  5'- cCAAGCGCCUGUACAUCGGACUCAGCCa -3'
miRNA:   3'- -GUUCGCGGACAUGUAGCCUGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 57190 0.71 0.553514
Target:  5'- gCAGGCggGCCUGgaagGCggCGGcgcgaugguGCUCAGCCu -3'
miRNA:   3'- -GUUCG--CGGACa---UGuaGCC---------UGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 4229 0.67 0.798965
Target:  5'- gCAuGCGCCUGcGCGgcgcgcaGGAgccgcaCUCGGCCa -3'
miRNA:   3'- -GUuCGCGGACaUGUag-----CCU------GAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 63516 0.67 0.798
Target:  5'- aGGGCgGCCUGgcgucGCAgcucgCGGgcguggcGCUCGGCCu -3'
miRNA:   3'- gUUCG-CGGACa----UGUa----GCC-------UGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 44626 0.68 0.70644
Target:  5'- gGAGCGCCgggGggag-CGGguACUCGGCCc -3'
miRNA:   3'- gUUCGCGGa--CauguaGCC--UGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 1893 0.69 0.673878
Target:  5'- gCGAGCaCCUGgagACggUGGccaaACUCAGCCa -3'
miRNA:   3'- -GUUCGcGGACa--UGuaGCC----UGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 43636 0.69 0.667314
Target:  5'- cCGAGCGCg-GUGaguuCGUCGGACcaaacguccuggaacUCAGCCc -3'
miRNA:   3'- -GUUCGCGgaCAU----GUAGCCUG---------------AGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 14378 0.69 0.651955
Target:  5'- aGAGCGCgCUGgugGCGcUGGACgacgguuacUCGGCCa -3'
miRNA:   3'- gUUCGCG-GACa--UGUaGCCUG---------AGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 64012 0.72 0.499561
Target:  5'- cCAGGCGCUUGccGCGcuugaccUCGGugUCGGCg -3'
miRNA:   3'- -GUUCGCGGACa-UGU-------AGCCugAGUCGg -5'
19049 3' -53.7 NC_004684.1 + 21058 0.67 0.769291
Target:  5'- aCGGGUGCCgGUGCugacCGGGCaccUgGGCCg -3'
miRNA:   3'- -GUUCGCGGaCAUGua--GCCUG---AgUCGG- -5'
19049 3' -53.7 NC_004684.1 + 37584 0.67 0.769291
Target:  5'- gAGGUGCCcggcaucgGUACcgugCGGGCcCGGCCg -3'
miRNA:   3'- gUUCGCGGa-------CAUGua--GCCUGaGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 47882 0.67 0.773328
Target:  5'- uGAGCGUCUGgaucaggucguagGCAggccacggucggCGGcCUCGGCCa -3'
miRNA:   3'- gUUCGCGGACa------------UGUa-----------GCCuGAGUCGG- -5'
19049 3' -53.7 NC_004684.1 + 51198 0.67 0.779338
Target:  5'- --cGCGCCcuggccGUACAUCGuGGC-CAGCa -3'
miRNA:   3'- guuCGCGGa-----CAUGUAGC-CUGaGUCGg -5'
19049 3' -53.7 NC_004684.1 + 33620 0.67 0.789234
Target:  5'- -cAGCGCCggauCGUCGGGCggcuaccucgUCAGCg -3'
miRNA:   3'- guUCGCGGacauGUAGCCUG----------AGUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.