Results 41 - 60 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19049 | 3' | -53.7 | NC_004684.1 | + | 60970 | 0.66 | 0.853338 |
Target: 5'- --cGUGgCUGgugGCGUCGGcCUCGGUg -3' miRNA: 3'- guuCGCgGACa--UGUAGCCuGAGUCGg -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 39806 | 0.66 | 0.853338 |
Target: 5'- --uGCGCCgGUccAUGUCGGacagguGCUUGGCCa -3' miRNA: 3'- guuCGCGGaCA--UGUAGCC------UGAGUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 49650 | 0.66 | 0.844803 |
Target: 5'- gGAGCaCCgaccACGgcgUGGACUCGGCCc -3' miRNA: 3'- gUUCGcGGaca-UGUa--GCCUGAGUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 6004 | 0.67 | 0.759102 |
Target: 5'- uCAGGCGCac---CAUCGGACgcggUGGCCu -3' miRNA: 3'- -GUUCGCGgacauGUAGCCUGa---GUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 21058 | 0.67 | 0.769291 |
Target: 5'- aCGGGUGCCgGUGCugacCGGGCaccUgGGCCg -3' miRNA: 3'- -GUUCGCGGaCAUGua--GCCUG---AgUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 37584 | 0.67 | 0.769291 |
Target: 5'- gAGGUGCCcggcaucgGUACcgugCGGGCcCGGCCg -3' miRNA: 3'- gUUCGCGGa-------CAUGua--GCCUGaGUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 47882 | 0.67 | 0.773328 |
Target: 5'- uGAGCGUCUGgaucaggucguagGCAggccacggucggCGGcCUCGGCCa -3' miRNA: 3'- gUUCGCGGACa------------UGUa-----------GCCuGAGUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 51198 | 0.67 | 0.779338 |
Target: 5'- --cGCGCCcuggccGUACAUCGuGGC-CAGCa -3' miRNA: 3'- guuCGCGGa-----CAUGUAGC-CUGaGUCGg -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 33620 | 0.67 | 0.789234 |
Target: 5'- -cAGCGCCggauCGUCGGGCggcuaccucgUCAGCg -3' miRNA: 3'- guUCGCGGacauGUAGCCUG----------AGUCGg -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 63516 | 0.67 | 0.798 |
Target: 5'- aGGGCgGCCUGgcgucGCAgcucgCGGgcguggcGCUCGGCCu -3' miRNA: 3'- gUUCG-CGGACa----UGUa----GCC-------UGAGUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 4229 | 0.67 | 0.798965 |
Target: 5'- gCAuGCGCCUGcGCGgcgcgcaGGAgccgcaCUCGGCCa -3' miRNA: 3'- -GUuCGCGGACaUGUag-----CCU------GAGUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 11633 | 0.68 | 0.748784 |
Target: 5'- -cGGcCGCCUGacCGUCGGcaUCGGCCa -3' miRNA: 3'- guUC-GCGGACauGUAGCCugAGUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 47824 | 0.68 | 0.738347 |
Target: 5'- --cGUGCCUGcuCGUCGGAC-CcGCCu -3' miRNA: 3'- guuCGCGGACauGUAGCCUGaGuCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 33500 | 0.68 | 0.727803 |
Target: 5'- -cGGCGgcCCUGUACucgCGGGCgguggCGGCUa -3' miRNA: 3'- guUCGC--GGACAUGua-GCCUGa----GUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 31750 | 0.68 | 0.727803 |
Target: 5'- -cGGC-CCUGUACGUCGGcCUgUAcGCCa -3' miRNA: 3'- guUCGcGGACAUGUAGCCuGA-GU-CGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 32278 | 0.66 | 0.827072 |
Target: 5'- -cGGCGaagagGUGCAUUGGcGCUCGGCg -3' miRNA: 3'- guUCGCgga--CAUGUAGCC-UGAGUCGg -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 9464 | 0.66 | 0.827072 |
Target: 5'- cCGGGCGCUgGaGCuggCGGGCaagcgCAGCCg -3' miRNA: 3'- -GUUCGCGGaCaUGua-GCCUGa----GUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 20739 | 0.66 | 0.836045 |
Target: 5'- gGAGCGCCUGgagGCAccgCaGGCgguGCCg -3' miRNA: 3'- gUUCGCGGACa--UGUa--GcCUGaguCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 61693 | 0.66 | 0.836045 |
Target: 5'- -uGGCGUCgGUGCcgUGGGCa-GGCCg -3' miRNA: 3'- guUCGCGGaCAUGuaGCCUGagUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 4892 | 0.66 | 0.844803 |
Target: 5'- uCAGGCgGCCUGgucgcCAcCGGcCUCGGCg -3' miRNA: 3'- -GUUCG-CGGACau---GUaGCCuGAGUCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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