Results 21 - 40 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19049 | 3' | -53.7 | NC_004684.1 | + | 36773 | 0.67 | 0.798965 |
Target: 5'- --cGCGCCcgGUGCcgacgcugGUCGGcggcgGCUCGGUCa -3' miRNA: 3'- guuCGCGGa-CAUG--------UAGCC-----UGAGUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 63516 | 0.67 | 0.798 |
Target: 5'- aGGGCgGCCUGgcgucGCAgcucgCGGgcguggcGCUCGGCCu -3' miRNA: 3'- gUUCG-CGGACa----UGUa----GCC-------UGAGUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 33620 | 0.67 | 0.789234 |
Target: 5'- -cAGCGCCggauCGUCGGGCggcuaccucgUCAGCg -3' miRNA: 3'- guUCGCGGacauGUAGCCUG----------AGUCGg -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 23254 | 0.67 | 0.788251 |
Target: 5'- gCGAGCGCCUgGUGCucaacgacgCGGGCgaggagcgcguggUCGGCa -3' miRNA: 3'- -GUUCGCGGA-CAUGua-------GCCUG-------------AGUCGg -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 51198 | 0.67 | 0.779338 |
Target: 5'- --cGCGCCcuggccGUACAUCGuGGC-CAGCa -3' miRNA: 3'- guuCGCGGa-----CAUGUAGC-CUGaGUCGg -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 47882 | 0.67 | 0.773328 |
Target: 5'- uGAGCGUCUGgaucaggucguagGCAggccacggucggCGGcCUCGGCCa -3' miRNA: 3'- gUUCGCGGACa------------UGUa-----------GCCuGAGUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 37584 | 0.67 | 0.769291 |
Target: 5'- gAGGUGCCcggcaucgGUACcgugCGGGCcCGGCCg -3' miRNA: 3'- gUUCGCGGa-------CAUGua--GCCUGaGUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 21058 | 0.67 | 0.769291 |
Target: 5'- aCGGGUGCCgGUGCugacCGGGCaccUgGGCCg -3' miRNA: 3'- -GUUCGCGGaCAUGua--GCCUG---AgUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 61402 | 0.67 | 0.769291 |
Target: 5'- --uGCGCCUGaGCcaggcCGGgacuucGCUCGGCCg -3' miRNA: 3'- guuCGCGGACaUGua---GCC------UGAGUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 36290 | 0.67 | 0.769291 |
Target: 5'- -cAGCGCCUGcgcgGCGUCcuGC-CAGCCc -3' miRNA: 3'- guUCGCGGACa---UGUAGccUGaGUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 6004 | 0.67 | 0.759102 |
Target: 5'- uCAGGCGCac---CAUCGGACgcggUGGCCu -3' miRNA: 3'- -GUUCGCGgacauGUAGCCUGa---GUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 62830 | 0.67 | 0.759102 |
Target: 5'- -cAGCGCCUcgaugGCcUCGGcaaUCAGCCa -3' miRNA: 3'- guUCGCGGAca---UGuAGCCug-AGUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 35424 | 0.68 | 0.752926 |
Target: 5'- -cAGCGCggagguggugaucggCUG-GCGUCGGAUUgCGGCCa -3' miRNA: 3'- guUCGCG---------------GACaUGUAGCCUGA-GUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 11443 | 0.68 | 0.748784 |
Target: 5'- gGAGCGCg---GCGUCGGcgUCGGCCu -3' miRNA: 3'- gUUCGCGgacaUGUAGCCugAGUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 11633 | 0.68 | 0.748784 |
Target: 5'- -cGGcCGCCUGacCGUCGGcaUCGGCCa -3' miRNA: 3'- guUC-GCGGACauGUAGCCugAGUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 59917 | 0.68 | 0.748784 |
Target: 5'- -cGGCcCUUGUcaGCGUCGGugUcCGGCCc -3' miRNA: 3'- guUCGcGGACA--UGUAGCCugA-GUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 47824 | 0.68 | 0.738347 |
Target: 5'- --cGUGCCUGcuCGUCGGAC-CcGCCu -3' miRNA: 3'- guuCGCGGACauGUAGCCUGaGuCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 66727 | 0.68 | 0.727803 |
Target: 5'- uCAGGCGCacgCUGUcgugcGCGUCGGugUCcuuggGGUCg -3' miRNA: 3'- -GUUCGCG---GACA-----UGUAGCCugAG-----UCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 33500 | 0.68 | 0.727803 |
Target: 5'- -cGGCGgcCCUGUACucgCGGGCgguggCGGCUa -3' miRNA: 3'- guUCGC--GGACAUGua-GCCUGa----GUCGG- -5' |
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19049 | 3' | -53.7 | NC_004684.1 | + | 52102 | 0.68 | 0.727803 |
Target: 5'- --cGCGCCaGccaaACGUCGGGCUggUGGCCa -3' miRNA: 3'- guuCGCGGaCa---UGUAGCCUGA--GUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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