Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19049 | 5' | -56.7 | NC_004684.1 | + | 65327 | 0.67 | 0.54957 |
Target: 5'- -cGGCC-AGCGCCaGgcagGCCACgAUGGc -3' miRNA: 3'- uaCCGGuUCGUGGaCa---CGGUG-UACCu -5' |
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19049 | 5' | -56.7 | NC_004684.1 | + | 41791 | 0.67 | 0.54957 |
Target: 5'- -cGGCCAGGUGCCgacGCCGacguucuuCGUGGAc -3' miRNA: 3'- uaCCGGUUCGUGGacaCGGU--------GUACCU- -5' |
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19049 | 5' | -56.7 | NC_004684.1 | + | 12982 | 0.67 | 0.54957 |
Target: 5'- -aGGCaacacCGAGCGCCgg-GCCGgGUGGAu -3' miRNA: 3'- uaCCG-----GUUCGUGGacaCGGUgUACCU- -5' |
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19049 | 5' | -56.7 | NC_004684.1 | + | 4999 | 0.67 | 0.538845 |
Target: 5'- -aGGgCAAGgGCCcgGUGCCGCuccugAUGGAc -3' miRNA: 3'- uaCCgGUUCgUGGa-CACGGUG-----UACCU- -5' |
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19049 | 5' | -56.7 | NC_004684.1 | + | 9937 | 0.67 | 0.537776 |
Target: 5'- uGUGGCCGGGCugaccauGCuCUGggucGCCACGgucaUGGAg -3' miRNA: 3'- -UACCGGUUCG-------UG-GACa---CGGUGU----ACCU- -5' |
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19049 | 5' | -56.7 | NC_004684.1 | + | 34284 | 0.68 | 0.517615 |
Target: 5'- uUGGCCAgcgcgAGCGCCUGcgucggcagcGCCACGccGGAc -3' miRNA: 3'- uACCGGU-----UCGUGGACa---------CGGUGUa-CCU- -5' |
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19049 | 5' | -56.7 | NC_004684.1 | + | 45693 | 0.68 | 0.507126 |
Target: 5'- -aGGCCGAGCcaugACCacgGUGUCGCAcaucgGGAa -3' miRNA: 3'- uaCCGGUUCG----UGGa--CACGGUGUa----CCU- -5' |
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19049 | 5' | -56.7 | NC_004684.1 | + | 13250 | 0.68 | 0.506082 |
Target: 5'- cGUGGCCAggccgugaccgccAGCGCgCUGgugGCCGCcgGUGGc -3' miRNA: 3'- -UACCGGU-------------UCGUG-GACa--CGGUG--UACCu -5' |
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19049 | 5' | -56.7 | NC_004684.1 | + | 25350 | 0.68 | 0.496728 |
Target: 5'- gGUGGCCuuGGCGgCg--GCCugAUGGAc -3' miRNA: 3'- -UACCGGu-UCGUgGacaCGGugUACCU- -5' |
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19049 | 5' | -56.7 | NC_004684.1 | + | 795 | 0.68 | 0.496728 |
Target: 5'- gAUGGCCcucaccuGCACCUcgccGUGgcggcCCGCAUGGAc -3' miRNA: 3'- -UACCGGuu-----CGUGGA----CAC-----GGUGUACCU- -5' |
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19049 | 5' | -56.7 | NC_004684.1 | + | 52876 | 0.68 | 0.486427 |
Target: 5'- -aGGCCAGGguCACCgucacGUGCCACcgGcGAc -3' miRNA: 3'- uaCCGGUUC--GUGGa----CACGGUGuaC-CU- -5' |
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19049 | 5' | -56.7 | NC_004684.1 | + | 44692 | 0.68 | 0.486427 |
Target: 5'- uUGGCCAcGU-CCUGcGCCGCcgGGGc -3' miRNA: 3'- uACCGGUuCGuGGACaCGGUGuaCCU- -5' |
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19049 | 5' | -56.7 | NC_004684.1 | + | 15877 | 0.69 | 0.456158 |
Target: 5'- cGUGGCCGccAGCGgcCCUGUgcaGCCGCA-GGGc -3' miRNA: 3'- -UACCGGU--UCGU--GGACA---CGGUGUaCCU- -5' |
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19049 | 5' | -56.7 | NC_004684.1 | + | 58622 | 0.69 | 0.456158 |
Target: 5'- -cGGCCcguGGCGgCUgGUGCCGCGcUGGGc -3' miRNA: 3'- uaCCGGu--UCGUgGA-CACGGUGU-ACCU- -5' |
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19049 | 5' | -56.7 | NC_004684.1 | + | 37659 | 0.69 | 0.446295 |
Target: 5'- -cGGUCAGGCAUCgacccgGUgcGCCAgGUGGAu -3' miRNA: 3'- uaCCGGUUCGUGGa-----CA--CGGUgUACCU- -5' |
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19049 | 5' | -56.7 | NC_004684.1 | + | 23100 | 0.69 | 0.436552 |
Target: 5'- -aGGCCGAGCAguccggcgaUCUG-GCCAaGUGGAu -3' miRNA: 3'- uaCCGGUUCGU---------GGACaCGGUgUACCU- -5' |
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19049 | 5' | -56.7 | NC_004684.1 | + | 366 | 0.69 | 0.436552 |
Target: 5'- gGUGGCCAGGcCAUCgugGUGCCGguCA-GGAu -3' miRNA: 3'- -UACCGGUUC-GUGGa--CACGGU--GUaCCU- -5' |
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19049 | 5' | -56.7 | NC_004684.1 | + | 19701 | 0.69 | 0.436552 |
Target: 5'- cUGGCCGAGCcaagACCUGggacgGCCACucgGuGAg -3' miRNA: 3'- uACCGGUUCG----UGGACa----CGGUGua-C-CU- -5' |
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19049 | 5' | -56.7 | NC_004684.1 | + | 27022 | 0.69 | 0.436552 |
Target: 5'- --aGCCAGGCACCggGUGCCG-GUGGc -3' miRNA: 3'- uacCGGUUCGUGGa-CACGGUgUACCu -5' |
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19049 | 5' | -56.7 | NC_004684.1 | + | 51170 | 0.7 | 0.41744 |
Target: 5'- uGUGGCCGAuGCGCCgg-GCCA--UGGAc -3' miRNA: 3'- -UACCGGUU-CGUGGacaCGGUguACCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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