Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19050 | 3' | -63.9 | NC_004684.1 | + | 6447 | 0.67 | 0.275159 |
Target: 5'- ---cGCuuGGccgaGGCGCAGGGGAUgaugaccagcugGGCGg -3' miRNA: 3'- uccaCGggCC----UCGCGUCCCCUA------------CCGC- -5' |
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19050 | 3' | -63.9 | NC_004684.1 | + | 14732 | 0.67 | 0.295321 |
Target: 5'- gAGGUGCUggccaccugGGAGCGCAagcaugccGGuGAUGGCGa -3' miRNA: 3'- -UCCACGGg--------CCUCGCGU--------CCcCUACCGC- -5' |
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19050 | 3' | -63.9 | NC_004684.1 | + | 15512 | 0.67 | 0.30939 |
Target: 5'- aAGGccGCCCGGGGC-CGGGcgcuGGA-GGCGc -3' miRNA: 3'- -UCCa-CGGGCCUCGcGUCC----CCUaCCGC- -5' |
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19050 | 3' | -63.9 | NC_004684.1 | + | 16753 | 0.67 | 0.302292 |
Target: 5'- cGGcugGCCUGGAacuCGC-GGGGAUGaGCGg -3' miRNA: 3'- uCCa--CGGGCCUc--GCGuCCCCUAC-CGC- -5' |
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19050 | 3' | -63.9 | NC_004684.1 | + | 19775 | 0.67 | 0.30939 |
Target: 5'- cGGUGCCCgccgGGGGCGaCAa--GAUGGCGg -3' miRNA: 3'- uCCACGGG----CCUCGC-GUcccCUACCGC- -5' |
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19050 | 3' | -63.9 | NC_004684.1 | + | 22196 | 0.75 | 0.082654 |
Target: 5'- --cUGCCgcUGGAGCGCGGcGGGGUGGUGg -3' miRNA: 3'- uccACGG--GCCUCGCGUC-CCCUACCGC- -5' |
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19050 | 3' | -63.9 | NC_004684.1 | + | 25573 | 0.68 | 0.25001 |
Target: 5'- aAGGUGCgcuacCCGGAGCGCuccagauugGGuGGGAcgccgGGCa -3' miRNA: 3'- -UCCACG-----GGCCUCGCG---------UC-CCCUa----CCGc -5' |
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19050 | 3' | -63.9 | NC_004684.1 | + | 27417 | 1.07 | 0.000277 |
Target: 5'- cAGGUGCCCGGAGCGCAGGGGAUGGCGc -3' miRNA: 3'- -UCCACGGGCCUCGCGUCCCCUACCGC- -5' |
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19050 | 3' | -63.9 | NC_004684.1 | + | 36985 | 0.66 | 0.323964 |
Target: 5'- cAGGUguuGCCaCGGcAGCGCc-GGGAUGcGCGu -3' miRNA: 3'- -UCCA---CGG-GCC-UCGCGucCCCUAC-CGC- -5' |
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19050 | 3' | -63.9 | NC_004684.1 | + | 36999 | 0.67 | 0.288475 |
Target: 5'- aAGGUGUacauCCGGcGCGCGGGGuccGAUGaGCc -3' miRNA: 3'- -UCCACG----GGCCuCGCGUCCC---CUAC-CGc -5' |
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19050 | 3' | -63.9 | NC_004684.1 | + | 39959 | 0.73 | 0.110188 |
Target: 5'- cGGUGCCCGGAGCGCcauccccugcgcuccGGGcaccuggucgguguGGUGGCu -3' miRNA: 3'- uCCACGGGCCUCGCGu--------------CCC--------------CUACCGc -5' |
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19050 | 3' | -63.9 | NC_004684.1 | + | 40450 | 0.66 | 0.339043 |
Target: 5'- cGGUGCCCaGGcGGcCGCcugcucGGGGGUcucGGCGg -3' miRNA: 3'- uCCACGGG-CC-UC-GCGu-----CCCCUA---CCGC- -5' |
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19050 | 3' | -63.9 | NC_004684.1 | + | 40716 | 0.72 | 0.125997 |
Target: 5'- cGGUGgCCGGgacgaccAGCGCggcgGGGGcGGUGGCGg -3' miRNA: 3'- uCCACgGGCC-------UCGCG----UCCC-CUACCGC- -5' |
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19050 | 3' | -63.9 | NC_004684.1 | + | 44924 | 0.73 | 0.10903 |
Target: 5'- cAGGgaaccgGCCUGGAGCGCGGgcGGGAUcgccgccgcgccgacGGCGa -3' miRNA: 3'- -UCCa-----CGGGCCUCGCGUC--CCCUA---------------CCGC- -5' |
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19050 | 3' | -63.9 | NC_004684.1 | + | 46329 | 0.69 | 0.205932 |
Target: 5'- cAGGUGCCCGGucagcaccggcacccGUGCAcGGGucucguUGGCGa -3' miRNA: 3'- -UCCACGGGCCu--------------CGCGUcCCCu-----ACCGC- -5' |
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19050 | 3' | -63.9 | NC_004684.1 | + | 47100 | 0.75 | 0.082654 |
Target: 5'- cGGUGCCgGGA-CGCGGGGGuccGGCa -3' miRNA: 3'- uCCACGGgCCUcGCGUCCCCua-CCGc -5' |
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19050 | 3' | -63.9 | NC_004684.1 | + | 47414 | 0.66 | 0.323223 |
Target: 5'- cGGUGCCUgcuGGAgGUGguGGGGGUugaucgcGGCc -3' miRNA: 3'- uCCACGGG---CCU-CGCguCCCCUA-------CCGc -5' |
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19050 | 3' | -63.9 | NC_004684.1 | + | 52545 | 0.68 | 0.256114 |
Target: 5'- gAGGUGUCCGGcaccGGUucGUAGGuGAUGGUGa -3' miRNA: 3'- -UCCACGGGCC----UCG--CGUCCcCUACCGC- -5' |
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19050 | 3' | -63.9 | NC_004684.1 | + | 53628 | 0.68 | 0.25001 |
Target: 5'- uGGUcGCCUGGAGCGCcAGGccguugagcaccGaGGUGGUGg -3' miRNA: 3'- uCCA-CGGGCCUCGCG-UCC------------C-CUACCGC- -5' |
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19050 | 3' | -63.9 | NC_004684.1 | + | 54779 | 0.69 | 0.221276 |
Target: 5'- cGGUGCCCGcaaGGUGCGcGGcGUGGCGg -3' miRNA: 3'- uCCACGGGCc--UCGCGUcCCcUACCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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