Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 19050 | 5' | -55 | NC_004684.1 | + | 10725 | 0.72 | 0.414624 |
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Target: 5'- cACCGCCAggcguuucuGCCACGGGgucaGGGACGa-- -3' miRNA: 3'- -UGGCGGUau-------UGGUGUCC----UCCUGCagu -5' |
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| 19050 | 5' | -55 | NC_004684.1 | + | 2862 | 0.73 | 0.396292 |
|
Target: 5'- gGCCGCCG-AGCCGCu---GGGCGUCAu -3' miRNA: 3'- -UGGCGGUaUUGGUGuccuCCUGCAGU- -5' |
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| 19050 | 5' | -55 | NC_004684.1 | + | 25965 | 0.74 | 0.352816 |
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Target: 5'- cACCGCCGcaccaccGCCACGGG-GGACGcCAc -3' miRNA: 3'- -UGGCGGUau-----UGGUGUCCuCCUGCaGU- -5' |
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| 19050 | 5' | -55 | NC_004684.1 | + | 42049 | 0.76 | 0.249707 |
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Target: 5'- cGCCGCCAaGGCCACcgGGGAGGcCGcCAu -3' miRNA: 3'- -UGGCGGUaUUGGUG--UCCUCCuGCaGU- -5' |
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| 19050 | 5' | -55 | NC_004684.1 | + | 19332 | 0.77 | 0.225206 |
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Target: 5'- cGCCGCCGUGGCCgaGCGGGAGG-CGc-- -3' miRNA: 3'- -UGGCGGUAUUGG--UGUCCUCCuGCagu -5' |
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| 19050 | 5' | -55 | NC_004684.1 | + | 14609 | 0.83 | 0.086418 |
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Target: 5'- aACCGCCAgcGCCucuACgAGGAGGGCGUCAa -3' miRNA: 3'- -UGGCGGUauUGG---UG-UCCUCCUGCAGU- -5' |
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| 19050 | 5' | -55 | NC_004684.1 | + | 27451 | 1.08 | 0.001554 |
|
Target: 5'- cACCGCCAUAACCACAGGAGGACGUCAu -3' miRNA: 3'- -UGGCGGUAUUGGUGUCCUCCUGCAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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