Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19050 | 5' | -55 | NC_004684.1 | + | 54983 | 0.68 | 0.642347 |
Target: 5'- gGCCGCCG--ACCACAGc-GGACGg-- -3' miRNA: 3'- -UGGCGGUauUGGUGUCcuCCUGCagu -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 55560 | 0.68 | 0.642347 |
Target: 5'- gGCCGCCGUGGCC-CGGuGGccGGGgGUCc -3' miRNA: 3'- -UGGCGGUAUUGGuGUC-CU--CCUgCAGu -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 15880 | 0.68 | 0.653246 |
Target: 5'- gGCCGCCAgcgGCCcuguGCAGccgcAGGGCGUCc -3' miRNA: 3'- -UGGCGGUau-UGG----UGUCc---UCCUGCAGu -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 62455 | 0.68 | 0.685784 |
Target: 5'- cCUGCCAgcGCUcCGGGAGGugGcCGu -3' miRNA: 3'- uGGCGGUauUGGuGUCCUCCugCaGU- -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 36450 | 0.67 | 0.696543 |
Target: 5'- uGCUGgCGUGACCAU-GGuGGACGUgAg -3' miRNA: 3'- -UGGCgGUAUUGGUGuCCuCCUGCAgU- -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 52240 | 0.67 | 0.72841 |
Target: 5'- gGCCGUgGU-GCCACAGcGGcGGuACGUCGa -3' miRNA: 3'- -UGGCGgUAuUGGUGUC-CU-CC-UGCAGU- -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 45694 | 0.67 | 0.717867 |
Target: 5'- gGCCgaGCCAUGACCACGGuGucgcacaucGGGAaGUCGg -3' miRNA: 3'- -UGG--CGGUAUUGGUGUC-C---------UCCUgCAGU- -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 20472 | 0.67 | 0.738858 |
Target: 5'- cACCGCCGuUGGCCGgucCuGGGGGAUG-CGg -3' miRNA: 3'- -UGGCGGU-AUUGGU---GuCCUCCUGCaGU- -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 67198 | 0.67 | 0.717867 |
Target: 5'- cGuuGCCAgGGCCACcuuGGuGGugGUCc -3' miRNA: 3'- -UggCGGUaUUGGUGu--CCuCCugCAGu -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 34200 | 0.67 | 0.717867 |
Target: 5'- gUCGCCAUGGCCACGGuGAcGACcuugccgagGUCGa -3' miRNA: 3'- uGGCGGUAUUGGUGUC-CUcCUG---------CAGU- -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 18065 | 0.67 | 0.696543 |
Target: 5'- cGCCGaCCAUGGCCGCcgacGGGucgauccuGGACGgCAa -3' miRNA: 3'- -UGGC-GGUAUUGGUG----UCCu-------CCUGCaGU- -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 21443 | 0.67 | 0.696543 |
Target: 5'- gGCCGCCGUcGAgUACGuGGuGGACGcCAu -3' miRNA: 3'- -UGGCGGUA-UUgGUGU-CCuCCUGCaGU- -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 11417 | 0.66 | 0.789291 |
Target: 5'- uUCGCCGUAGacgccgaugacCCGCuGGAGcgcGGCGUCGg -3' miRNA: 3'- uGGCGGUAUU-----------GGUGuCCUC---CUGCAGU- -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 24653 | 0.66 | 0.76852 |
Target: 5'- gGCCGCCA--ACCACGuccuGGAcaugcuucacaccGGAgGUCAc -3' miRNA: 3'- -UGGCGGUauUGGUGU----CCU-------------CCUgCAGU- -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 29326 | 0.66 | 0.779483 |
Target: 5'- gUCGCCGUugagcuucuuGGCCuCGGG-GGugGUCGg -3' miRNA: 3'- uGGCGGUA----------UUGGuGUCCuCCugCAGU- -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 6058 | 0.66 | 0.759426 |
Target: 5'- gGCCGCCAccuacGCCGCc-GAGGGCGgCGg -3' miRNA: 3'- -UGGCGGUau---UGGUGucCUCCUGCaGU- -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 21556 | 0.66 | 0.749201 |
Target: 5'- aGCgCGgCAUGACCGCc-GAGGcCGUCAc -3' miRNA: 3'- -UG-GCgGUAUUGGUGucCUCCuGCAGU- -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 63753 | 0.66 | 0.789291 |
Target: 5'- gACCGgCAUGACC-CAGGuGGcGCGcuUCGg -3' miRNA: 3'- -UGGCgGUAUUGGuGUCCuCC-UGC--AGU- -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 63319 | 0.66 | 0.749201 |
Target: 5'- gGCCGuuCCAguugAACC--GGGAGGugGUCu -3' miRNA: 3'- -UGGC--GGUa---UUGGugUCCUCCugCAGu -5' |
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19050 | 5' | -55 | NC_004684.1 | + | 12412 | 0.66 | 0.749201 |
Target: 5'- gUCGCCGUuuaguguucGACCGCAGaGAGcGACcGUCu -3' miRNA: 3'- uGGCGGUA---------UUGGUGUC-CUC-CUG-CAGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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