Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 19050 | 5' | -55 | NC_004684.1 | + | 54983 | 0.68 | 0.642347 |
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Target: 5'- gGCCGCCG--ACCACAGc-GGACGg-- -3' miRNA: 3'- -UGGCGGUauUGGUGUCcuCCUGCagu -5' |
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| 19050 | 5' | -55 | NC_004684.1 | + | 55560 | 0.68 | 0.642347 |
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Target: 5'- gGCCGCCGUGGCC-CGGuGGccGGGgGUCc -3' miRNA: 3'- -UGGCGGUAUUGGuGUC-CU--CCUgCAGu -5' |
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| 19050 | 5' | -55 | NC_004684.1 | + | 62455 | 0.68 | 0.685784 |
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Target: 5'- cCUGCCAgcGCUcCGGGAGGugGcCGu -3' miRNA: 3'- uGGCGGUauUGGuGUCCUCCugCaGU- -5' |
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| 19050 | 5' | -55 | NC_004684.1 | + | 63319 | 0.66 | 0.749201 |
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Target: 5'- gGCCGuuCCAguugAACC--GGGAGGugGUCu -3' miRNA: 3'- -UGGC--GGUa---UUGGugUCCUCCugCAGu -5' |
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| 19050 | 5' | -55 | NC_004684.1 | + | 63753 | 0.66 | 0.789291 |
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Target: 5'- gACCGgCAUGACC-CAGGuGGcGCGcuUCGg -3' miRNA: 3'- -UGGCgGUAUUGGuGUCCuCC-UGC--AGU- -5' |
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| 19050 | 5' | -55 | NC_004684.1 | + | 65581 | 0.68 | 0.630349 |
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Target: 5'- aGCCGCCAUGgccucggucaugaGCCGCAcGGcGG-CGUCc -3' miRNA: 3'- -UGGCGGUAU-------------UGGUGU-CCuCCuGCAGu -5' |
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| 19050 | 5' | -55 | NC_004684.1 | + | 67198 | 0.67 | 0.717867 |
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Target: 5'- cGuuGCCAgGGCCACcuuGGuGGugGUCc -3' miRNA: 3'- -UggCGGUaUUGGUGu--CCuCCugCAGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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