Results 41 - 47 of 47 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 19050 | 5' | -55 | NC_004684.1 | + | 54278 | 0.69 | 0.598759 |
|
Target: 5'- aGCUGCCGcgcUGGCCGguGGGGcGGCGUgCAc -3' miRNA: 3'- -UGGCGGU---AUUGGUguCCUC-CUGCA-GU- -5' |
|||||||
| 19050 | 5' | -55 | NC_004684.1 | + | 33689 | 0.69 | 0.620533 |
|
Target: 5'- cACCGCCGcuGCCGCuGGcGAGGGUGUCc -3' miRNA: 3'- -UGGCGGUauUGGUG-UC-CUCCUGCAGu -5' |
|||||||
| 19050 | 5' | -55 | NC_004684.1 | + | 12391 | 0.68 | 0.642347 |
|
Target: 5'- -gUGCCGUuuGCCGCAGGAGccguccgcuGugGUCGg -3' miRNA: 3'- ugGCGGUAu-UGGUGUCCUC---------CugCAGU- -5' |
|||||||
| 19050 | 5' | -55 | NC_004684.1 | + | 54639 | 0.68 | 0.642347 |
|
Target: 5'- aGCCGCgcgGGCCAa--GAGGGCGUCGa -3' miRNA: 3'- -UGGCGguaUUGGUgucCUCCUGCAGU- -5' |
|||||||
| 19050 | 5' | -55 | NC_004684.1 | + | 18065 | 0.67 | 0.696543 |
|
Target: 5'- cGCCGaCCAUGGCCGCcgacGGGucgauccuGGACGgCAa -3' miRNA: 3'- -UGGC-GGUAUUGGUG----UCCu-------CCUGCaGU- -5' |
|||||||
| 19050 | 5' | -55 | NC_004684.1 | + | 21443 | 0.67 | 0.696543 |
|
Target: 5'- gGCCGCCGUcGAgUACGuGGuGGACGcCAu -3' miRNA: 3'- -UGGCGGUA-UUgGUGU-CCuCCUGCaGU- -5' |
|||||||
| 19050 | 5' | -55 | NC_004684.1 | + | 27451 | 1.08 | 0.001554 |
|
Target: 5'- cACCGCCAUAACCACAGGAGGACGUCAu -3' miRNA: 3'- -UGGCGGUAUUGGUGUCCUCCUGCAGU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home