miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19051 3' -59.3 NC_004684.1 + 33819 0.66 0.590189
Target:  5'- gCGUCGGCgggcggugUGCccgGCGGCGGcGG-CAACg -3'
miRNA:   3'- aGCAGCCG--------GCG---CGCCGCCaCUaGUUG- -5'
19051 3' -59.3 NC_004684.1 + 46677 0.66 0.590189
Target:  5'- gCGUUGGCguUGCgGUGGCGGUGcggUGGCg -3'
miRNA:   3'- aGCAGCCG--GCG-CGCCGCCACua-GUUG- -5'
19051 3' -59.3 NC_004684.1 + 65202 0.66 0.579748
Target:  5'- gCGUagUGGCCGUGCGGCaccucgcgGGccaUGAccgUCAACg -3'
miRNA:   3'- aGCA--GCCGGCGCGCCG--------CC---ACU---AGUUG- -5'
19051 3' -59.3 NC_004684.1 + 46115 0.66 0.579748
Target:  5'- aCGgcCGGgCGCGCGuGCcggGGUGGUUGACc -3'
miRNA:   3'- aGCa-GCCgGCGCGC-CG---CCACUAGUUG- -5'
19051 3' -59.3 NC_004684.1 + 25316 0.66 0.579748
Target:  5'- uUCGUCGGCCcugGCGGCGuaUGG-CGGCc -3'
miRNA:   3'- -AGCAGCCGGcg-CGCCGCc-ACUaGUUG- -5'
19051 3' -59.3 NC_004684.1 + 51571 0.66 0.579748
Target:  5'- -aGUgCGcGCUGCGCGGCGGcGAcCGGg -3'
miRNA:   3'- agCA-GC-CGGCGCGCCGCCaCUaGUUg -5'
19051 3' -59.3 NC_004684.1 + 7970 0.66 0.579748
Target:  5'- ----aGGCCGCcagGCGGCcGUGcgCAACa -3'
miRNA:   3'- agcagCCGGCG---CGCCGcCACuaGUUG- -5'
19051 3' -59.3 NC_004684.1 + 47955 0.66 0.569346
Target:  5'- gCGUCGGCaCG-GCuGGCGGUGu---ACg -3'
miRNA:   3'- aGCAGCCG-GCgCG-CCGCCACuaguUG- -5'
19051 3' -59.3 NC_004684.1 + 33869 0.66 0.569346
Target:  5'- aUCGuUCGGCCuaccaggcgGUGCgGGCGGUGccgGUgGGCg -3'
miRNA:   3'- -AGC-AGCCGG---------CGCG-CCGCCAC---UAgUUG- -5'
19051 3' -59.3 NC_004684.1 + 41923 0.66 0.569346
Target:  5'- aUCGU-GGCCGUGaccaaGGCGG---UCAACg -3'
miRNA:   3'- -AGCAgCCGGCGCg----CCGCCacuAGUUG- -5'
19051 3' -59.3 NC_004684.1 + 22440 0.66 0.569346
Target:  5'- aUCGcCGuCgGCGCGGCGGcGAUCc-- -3'
miRNA:   3'- -AGCaGCcGgCGCGCCGCCaCUAGuug -5'
19051 3' -59.3 NC_004684.1 + 22566 0.66 0.558991
Target:  5'- aUCGccacaUCGGUCGguaCGGCGGUGuUCGGCu -3'
miRNA:   3'- -AGC-----AGCCGGCgc-GCCGCCACuAGUUG- -5'
19051 3' -59.3 NC_004684.1 + 7050 0.66 0.558991
Target:  5'- cCGcUGGCCGaaCGC-GCGGUGAUCGc- -3'
miRNA:   3'- aGCaGCCGGC--GCGcCGCCACUAGUug -5'
19051 3' -59.3 NC_004684.1 + 57378 0.66 0.558991
Target:  5'- -gGUCGG-CGCGCGGCaGGUc--CGGCa -3'
miRNA:   3'- agCAGCCgGCGCGCCG-CCAcuaGUUG- -5'
19051 3' -59.3 NC_004684.1 + 48723 0.66 0.558991
Target:  5'- cCGUCGcGCC-CaGCGGCGGcacgaUGGUCAc- -3'
miRNA:   3'- aGCAGC-CGGcG-CGCCGCC-----ACUAGUug -5'
19051 3' -59.3 NC_004684.1 + 57139 0.66 0.554864
Target:  5'- gCG-CGGCUGguucgccuccaugGCGGCGGUGGcCGACg -3'
miRNA:   3'- aGCaGCCGGCg------------CGCCGCCACUaGUUG- -5'
19051 3' -59.3 NC_004684.1 + 64191 0.66 0.54869
Target:  5'- aCGUCGGCguUGC-CGGUGuGccgGAUCGACa -3'
miRNA:   3'- aGCAGCCG--GCGcGCCGC-Ca--CUAGUUG- -5'
19051 3' -59.3 NC_004684.1 + 49837 0.66 0.54869
Target:  5'- --cUCGGgaCGCGaggaCGGCGG-GAUCAGCa -3'
miRNA:   3'- agcAGCCg-GCGC----GCCGCCaCUAGUUG- -5'
19051 3' -59.3 NC_004684.1 + 59643 0.66 0.537428
Target:  5'- gUCGUCGgacgacaGCgGCGCGGCGauaccGAUCAGg -3'
miRNA:   3'- -AGCAGC-------CGgCGCGCCGCca---CUAGUUg -5'
19051 3' -59.3 NC_004684.1 + 47032 0.67 0.528274
Target:  5'- gUCGgggUGGCCuGCGCGGUgacGGUGcaccgggCGACg -3'
miRNA:   3'- -AGCa--GCCGG-CGCGCCG---CCACua-----GUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.