miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19051 3' -59.3 NC_004684.1 + 26765 1.1 0.000482
Target:  5'- uUCGUCGGCCGCGCGGCGGUGAUCAACg -3'
miRNA:   3'- -AGCAGCCGGCGCGCCGCCACUAGUUG- -5'
19051 3' -59.3 NC_004684.1 + 57532 0.79 0.084149
Target:  5'- gUCGggaucCGGCgGCagcucaccgGCGGCGGUGAUCGACg -3'
miRNA:   3'- -AGCa----GCCGgCG---------CGCCGCCACUAGUUG- -5'
19051 3' -59.3 NC_004684.1 + 4447 0.77 0.116537
Target:  5'- aUCGUCGGCgCGCGCcGCGcGcUGGUCGGCu -3'
miRNA:   3'- -AGCAGCCG-GCGCGcCGC-C-ACUAGUUG- -5'
19051 3' -59.3 NC_004684.1 + 63582 0.76 0.140478
Target:  5'- --aUCGGCCugcgcgGCGCGGCGGUGGUUAc- -3'
miRNA:   3'- agcAGCCGG------CGCGCCGCCACUAGUug -5'
19051 3' -59.3 NC_004684.1 + 45308 0.76 0.144245
Target:  5'- gUCGUUGGCgGCGCGuGCGGUGucccggUAGCc -3'
miRNA:   3'- -AGCAGCCGgCGCGC-CGCCACua----GUUG- -5'
19051 3' -59.3 NC_004684.1 + 11871 0.75 0.160255
Target:  5'- cUCGU-GGCgGCGCuGGCGGUGAacacaccgggauUCAACg -3'
miRNA:   3'- -AGCAgCCGgCGCG-CCGCCACU------------AGUUG- -5'
19051 3' -59.3 NC_004684.1 + 22366 0.75 0.171951
Target:  5'- gCGgCGGUCGCGCuGGCGGUGGacgugcaggcggcgUCGGCg -3'
miRNA:   3'- aGCaGCCGGCGCG-CCGCCACU--------------AGUUG- -5'
19051 3' -59.3 NC_004684.1 + 31671 0.75 0.173297
Target:  5'- cUGUCGGCgGUGCGGgugaaacaggacCGGcUGAUCAACa -3'
miRNA:   3'- aGCAGCCGgCGCGCC------------GCC-ACUAGUUG- -5'
19051 3' -59.3 NC_004684.1 + 35400 0.74 0.196637
Target:  5'- uUCGguggCGGCCugcggguagaucaGCGCGGagguGGUGAUCGGCu -3'
miRNA:   3'- -AGCa---GCCGG-------------CGCGCCg---CCACUAGUUG- -5'
19051 3' -59.3 NC_004684.1 + 50765 0.73 0.241222
Target:  5'- uUCGcccaUCGGugucccauguCCGCGCGGuCGGUGcgCAACa -3'
miRNA:   3'- -AGC----AGCC----------GGCGCGCC-GCCACuaGUUG- -5'
19051 3' -59.3 NC_004684.1 + 19600 0.72 0.259763
Target:  5'- cCGgCGGCCGagguGCuGGCGGUGAcgcUCGGCg -3'
miRNA:   3'- aGCaGCCGGCg---CG-CCGCCACU---AGUUG- -5'
19051 3' -59.3 NC_004684.1 + 15366 0.72 0.259763
Target:  5'- aUCG-CGGagCGCGCGcUGGUGAUCGGCu -3'
miRNA:   3'- -AGCaGCCg-GCGCGCcGCCACUAGUUG- -5'
19051 3' -59.3 NC_004684.1 + 66024 0.72 0.266197
Target:  5'- gCGUCGGCCaggGUGuUGGCGuUGGUCAGCc -3'
miRNA:   3'- aGCAGCCGG---CGC-GCCGCcACUAGUUG- -5'
19051 3' -59.3 NC_004684.1 + 11367 0.72 0.272759
Target:  5'- aCGguggUGGCCagcaGCGUGGUGGUGcgCGACu -3'
miRNA:   3'- aGCa---GCCGG----CGCGCCGCCACuaGUUG- -5'
19051 3' -59.3 NC_004684.1 + 47642 0.72 0.27945
Target:  5'- gUCGUggaCGGCCaGUGCGGCGuuggccgccuUGAUCAGCg -3'
miRNA:   3'- -AGCA---GCCGG-CGCGCCGCc---------ACUAGUUG- -5'
19051 3' -59.3 NC_004684.1 + 7915 0.71 0.300306
Target:  5'- cCGcUGGCCGCGCaGGUGGUGGaCAu- -3'
miRNA:   3'- aGCaGCCGGCGCG-CCGCCACUaGUug -5'
19051 3' -59.3 NC_004684.1 + 6854 0.7 0.322344
Target:  5'- gUCGaCGGCaccggGCGCGGCGa-GAUCAGCc -3'
miRNA:   3'- -AGCaGCCGg----CGCGCCGCcaCUAGUUG- -5'
19051 3' -59.3 NC_004684.1 + 35653 0.7 0.322344
Target:  5'- aCGUacagGGCCGUcgGCGGCGGUGuGUCGc- -3'
miRNA:   3'- aGCAg---CCGGCG--CGCCGCCAC-UAGUug -5'
19051 3' -59.3 NC_004684.1 + 61326 0.7 0.329953
Target:  5'- --aUCGGCUaccaGCGCGGCGuGguUGGUCAGCu -3'
miRNA:   3'- agcAGCCGG----CGCGCCGC-C--ACUAGUUG- -5'
19051 3' -59.3 NC_004684.1 + 65762 0.7 0.337695
Target:  5'- gCGUUGGCCGcCGCGcGCcGGUGggCGcgcGCa -3'
miRNA:   3'- aGCAGCCGGC-GCGC-CG-CCACuaGU---UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.