miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19051 3' -59.3 NC_004684.1 + 63679 0.67 0.528274
Target:  5'- gCGUugauacCGGCCaGCGCGGCGGcgcUGG-CGAUc -3'
miRNA:   3'- aGCA------GCCGG-CGCGCCGCC---ACUaGUUG- -5'
19051 3' -59.3 NC_004684.1 + 25265 0.67 0.525235
Target:  5'- gCGUCGGCguugaacaccauguCGCGC-GCGGUGAaCAc- -3'
miRNA:   3'- aGCAGCCG--------------GCGCGcCGCCACUaGUug -5'
19051 3' -59.3 NC_004684.1 + 44521 0.67 0.524223
Target:  5'- gCGUCuuGGCCGcCGUGGUGGcccggacgaacccGGUCGGCa -3'
miRNA:   3'- aGCAG--CCGGC-GCGCCGCCa------------CUAGUUG- -5'
19051 3' -59.3 NC_004684.1 + 7580 0.67 0.51817
Target:  5'- -gGUgCGGCUgguGCGCGGCaacccGGUGGUCGu- -3'
miRNA:   3'- agCA-GCCGG---CGCGCCG-----CCACUAGUug -5'
19051 3' -59.3 NC_004684.1 + 49530 0.67 0.51817
Target:  5'- gCGUgcaccCGGCgGUGUGcGCGGUGGcCGACu -3'
miRNA:   3'- aGCA-----GCCGgCGCGC-CGCCACUaGUUG- -5'
19051 3' -59.3 NC_004684.1 + 24513 0.67 0.51817
Target:  5'- ----gGGCCGCGCguucGGCGGUGccAUCuACg -3'
miRNA:   3'- agcagCCGGCGCG----CCGCCAC--UAGuUG- -5'
19051 3' -59.3 NC_004684.1 + 15297 0.67 0.51817
Target:  5'- aCGuUUGGCUgGCGCGacGCGGUGG-CAACc -3'
miRNA:   3'- aGC-AGCCGG-CGCGC--CGCCACUaGUUG- -5'
19051 3' -59.3 NC_004684.1 + 50602 0.67 0.508145
Target:  5'- -gGUCGGCgGU-CGGCGGgucAUCGGCg -3'
miRNA:   3'- agCAGCCGgCGcGCCGCCac-UAGUUG- -5'
19051 3' -59.3 NC_004684.1 + 61488 0.67 0.498203
Target:  5'- aUGUC-GCCGCGCaGGCGGcGGcgcUCGAUg -3'
miRNA:   3'- aGCAGcCGGCGCG-CCGCCaCU---AGUUG- -5'
19051 3' -59.3 NC_004684.1 + 12089 0.67 0.488348
Target:  5'- gUGcUGGcCCGCGCGGCGGccAUCAcGCa -3'
miRNA:   3'- aGCaGCC-GGCGCGCCGCCacUAGU-UG- -5'
19051 3' -59.3 NC_004684.1 + 54523 0.67 0.488348
Target:  5'- cCGgCGGCgGCcuCGGCGGUGG-CGGCc -3'
miRNA:   3'- aGCaGCCGgCGc-GCCGCCACUaGUUG- -5'
19051 3' -59.3 NC_004684.1 + 38483 0.67 0.478586
Target:  5'- gUCGUcCGGUCGaucaGCGGCGGUcgccaCGGCg -3'
miRNA:   3'- -AGCA-GCCGGCg---CGCCGCCAcua--GUUG- -5'
19051 3' -59.3 NC_004684.1 + 26564 0.67 0.478586
Target:  5'- gCGUucCGGCgcgcccuggCGCGCGGCGGUGu---GCg -3'
miRNA:   3'- aGCA--GCCG---------GCGCGCCGCCACuaguUG- -5'
19051 3' -59.3 NC_004684.1 + 55972 0.67 0.478586
Target:  5'- -gGUUGGCgaagUGgGCGGCcggguaGGUGGUCGGCg -3'
miRNA:   3'- agCAGCCG----GCgCGCCG------CCACUAGUUG- -5'
19051 3' -59.3 NC_004684.1 + 66773 0.68 0.468922
Target:  5'- cUCGUCGGCCagGUcguccaggucagGCGGCccGGaGGUCAGCu -3'
miRNA:   3'- -AGCAGCCGG--CG------------CGCCG--CCaCUAGUUG- -5'
19051 3' -59.3 NC_004684.1 + 58617 0.68 0.468922
Target:  5'- aUCGaCGGCC-CGUGGCGGcUGGUgCcGCg -3'
miRNA:   3'- -AGCaGCCGGcGCGCCGCC-ACUA-GuUG- -5'
19051 3' -59.3 NC_004684.1 + 41898 0.68 0.468922
Target:  5'- cUCGcCGGUCGCcUGGCccuGGUGAUgAGCu -3'
miRNA:   3'- -AGCaGCCGGCGcGCCG---CCACUAgUUG- -5'
19051 3' -59.3 NC_004684.1 + 43475 0.68 0.468922
Target:  5'- gCGgCGGCagcagGUGCGGCGG-GcgCAGCg -3'
miRNA:   3'- aGCaGCCGg----CGCGCCGCCaCuaGUUG- -5'
19051 3' -59.3 NC_004684.1 + 64359 0.68 0.459357
Target:  5'- ----gGGCCucguuGUGCGGCcccucGGUGAUCAGCa -3'
miRNA:   3'- agcagCCGG-----CGCGCCG-----CCACUAGUUG- -5'
19051 3' -59.3 NC_004684.1 + 44915 0.68 0.459357
Target:  5'- gCGUCGGUgCGCGcCGGguaguCGGUGG-CGACg -3'
miRNA:   3'- aGCAGCCG-GCGC-GCC-----GCCACUaGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.