miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19051 5' -59.5 NC_004684.1 + 19307 0.66 0.547473
Target:  5'- cGUGCUuGCC-CgGCCGACgCCGGAa-- -3'
miRNA:   3'- -CACGAcUGGuGgUGGCUG-GGCCUcua -5'
19051 5' -59.5 NC_004684.1 + 47028 0.66 0.547473
Target:  5'- -cGaCUGGCCuucgcaguaGCCGCCccACCCGGAGGc -3'
miRNA:   3'- caC-GACUGG---------UGGUGGc-UGGGCCUCUa -5'
19051 5' -59.5 NC_004684.1 + 66515 0.66 0.547473
Target:  5'- -cGCgGGCCGCCuucaGCgCGGCCCGGcGGg -3'
miRNA:   3'- caCGaCUGGUGG----UG-GCUGGGCCuCUa -5'
19051 5' -59.5 NC_004684.1 + 2079 0.66 0.541253
Target:  5'- -cGCUGGCCguggugcacagcgagGCCGCCGucgcguUCUGGGGAa -3'
miRNA:   3'- caCGACUGG---------------UGGUGGCu-----GGGCCUCUa -5'
19051 5' -59.5 NC_004684.1 + 6208 0.66 0.537119
Target:  5'- -cGCcgaGGCCACCaaccccGCCGACCUGGccGGGUg -3'
miRNA:   3'- caCGa--CUGGUGG------UGGCUGGGCC--UCUA- -5'
19051 5' -59.5 NC_004684.1 + 27394 0.66 0.536087
Target:  5'- -gGCUGguaaGCCACCacACCGaccagguGCCCGGAGc- -3'
miRNA:   3'- caCGAC----UGGUGG--UGGC-------UGGGCCUCua -5'
19051 5' -59.5 NC_004684.1 + 11162 0.66 0.530938
Target:  5'- gGUGgacCUGGCCGCCagcgagugggucaugACCGACCgGGAcGAg -3'
miRNA:   3'- -CAC---GACUGGUGG---------------UGGCUGGgCCU-CUa -5'
19051 5' -59.5 NC_004684.1 + 25519 0.66 0.526833
Target:  5'- -gGCUGuucuCgACCGCCGACgCCGGGucGGUg -3'
miRNA:   3'- caCGACu---GgUGGUGGCUG-GGCCU--CUA- -5'
19051 5' -59.5 NC_004684.1 + 30601 0.66 0.526833
Target:  5'- -aGCUGACCgagccGCCGCCGACcagcgucggcaCCGGGc-- -3'
miRNA:   3'- caCGACUGG-----UGGUGGCUG-----------GGCCUcua -5'
19051 5' -59.5 NC_004684.1 + 22947 0.66 0.526833
Target:  5'- cGUGCUcagcuggucGACUacGCCACCGGgCCGGAc-- -3'
miRNA:   3'- -CACGA---------CUGG--UGGUGGCUgGGCCUcua -5'
19051 5' -59.5 NC_004684.1 + 5936 0.66 0.510532
Target:  5'- -cGCUGGCCACCgggcgguccaaccugGCCG-CgCCGGuGAg -3'
miRNA:   3'- caCGACUGGUGG---------------UGGCuG-GGCCuCUa -5'
19051 5' -59.5 NC_004684.1 + 28905 0.66 0.50649
Target:  5'- -gGC-GACCGCCGCUGAUcgaCCGGAcGAc -3'
miRNA:   3'- caCGaCUGGUGGUGGCUG---GGCCU-CUa -5'
19051 5' -59.5 NC_004684.1 + 15562 0.66 0.50649
Target:  5'- -gGC-GACCAUCgagaaGCUGACCCGcGAGAa -3'
miRNA:   3'- caCGaCUGGUGG-----UGGCUGGGC-CUCUa -5'
19051 5' -59.5 NC_004684.1 + 38617 0.66 0.50649
Target:  5'- -gGgUGGCaUGCCGCUGACCUGGAGc- -3'
miRNA:   3'- caCgACUG-GUGGUGGCUGGGCCUCua -5'
19051 5' -59.5 NC_004684.1 + 7123 0.66 0.50649
Target:  5'- -cGCaaccGCCACCGCCGAgguacaCCCGGaAGGUg -3'
miRNA:   3'- caCGac--UGGUGGUGGCU------GGGCC-UCUA- -5'
19051 5' -59.5 NC_004684.1 + 10012 0.66 0.50649
Target:  5'- cUGCcgGACCugCcgcgcGCCGACCgGGAGc- -3'
miRNA:   3'- cACGa-CUGGugG-----UGGCUGGgCCUCua -5'
19051 5' -59.5 NC_004684.1 + 14734 0.66 0.499449
Target:  5'- gGUGCUGGCCACCugggagcgcaagcauGCCGgugauggcgacguGCCCGGcaccGAc -3'
miRNA:   3'- -CACGACUGGUGG---------------UGGC-------------UGGGCCu---CUa -5'
19051 5' -59.5 NC_004684.1 + 65804 0.66 0.496444
Target:  5'- aUGCcGugCACCggGCagguGACCCGGAGGc -3'
miRNA:   3'- cACGaCugGUGG--UGg---CUGGGCCUCUa -5'
19051 5' -59.5 NC_004684.1 + 37415 0.66 0.496444
Target:  5'- -cGCUGuccaucgacACCGCCACgguggUGGCaCCGGAGGUg -3'
miRNA:   3'- caCGAC---------UGGUGGUG-----GCUG-GGCCUCUA- -5'
19051 5' -59.5 NC_004684.1 + 66913 0.67 0.486489
Target:  5'- gGUGCUG-CCGaccUCGCUGGCCCGGuuGUc -3'
miRNA:   3'- -CACGACuGGU---GGUGGCUGGGCCucUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.