miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19051 5' -59.5 NC_004684.1 + 26803 1.05 0.000906
Target:  5'- cGUGCUGACCACCACCGACCCGGAGAUc -3'
miRNA:   3'- -CACGACUGGUGGUGGCUGGGCCUCUA- -5'
19051 5' -59.5 NC_004684.1 + 56031 0.86 0.023595
Target:  5'- cUGCUGGCCACCACCGuggGCCUGGAGGc -3'
miRNA:   3'- cACGACUGGUGGUGGC---UGGGCCUCUa -5'
19051 5' -59.5 NC_004684.1 + 4509 0.77 0.11072
Target:  5'- -aGCUGGCgGCCACCgugGACCCGGGGu- -3'
miRNA:   3'- caCGACUGgUGGUGG---CUGGGCCUCua -5'
19051 5' -59.5 NC_004684.1 + 26512 0.76 0.116919
Target:  5'- cGUGCUGACCACCGCUGacgugucgcGCCUGGGcGGUc -3'
miRNA:   3'- -CACGACUGGUGGUGGC---------UGGGCCU-CUA- -5'
19051 5' -59.5 NC_004684.1 + 59770 0.75 0.145074
Target:  5'- aUGCUGACgCACCACgGGCaCCGGAuGAa -3'
miRNA:   3'- cACGACUG-GUGGUGgCUG-GGCCU-CUa -5'
19051 5' -59.5 NC_004684.1 + 10334 0.75 0.145074
Target:  5'- -cGCaGGCCGCCAUCGACCCcgccGGGGAg -3'
miRNA:   3'- caCGaCUGGUGGUGGCUGGG----CCUCUa -5'
19051 5' -59.5 NC_004684.1 + 15160 0.74 0.174651
Target:  5'- -aGCUGGCCGCCGCCGccacgcACCUGG-GAc -3'
miRNA:   3'- caCGACUGGUGGUGGC------UGGGCCuCUa -5'
19051 5' -59.5 NC_004684.1 + 47936 0.73 0.18404
Target:  5'- -cGCgGGCCACCGCCG-CCCGGGc-- -3'
miRNA:   3'- caCGaCUGGUGGUGGCuGGGCCUcua -5'
19051 5' -59.5 NC_004684.1 + 599 0.73 0.204162
Target:  5'- -aGCUGACCuccggGCCGCCuGACCUGGAcGAc -3'
miRNA:   3'- caCGACUGG-----UGGUGG-CUGGGCCU-CUa -5'
19051 5' -59.5 NC_004684.1 + 22633 0.72 0.217131
Target:  5'- -gGgaGGCCGCCGCCagcggcgaccccaaaGACCUGGAGAa -3'
miRNA:   3'- caCgaCUGGUGGUGG---------------CUGGGCCUCUa -5'
19051 5' -59.5 NC_004684.1 + 10232 0.72 0.231969
Target:  5'- cGUGCgcgucGGCCACCGCCG-CCaUGGAGGc -3'
miRNA:   3'- -CACGa----CUGGUGGUGGCuGG-GCCUCUa -5'
19051 5' -59.5 NC_004684.1 + 48362 0.71 0.262898
Target:  5'- cUGCccGGCCGCCgguGCCaACCCGGAGAc -3'
miRNA:   3'- cACGa-CUGGUGG---UGGcUGGGCCUCUa -5'
19051 5' -59.5 NC_004684.1 + 44911 0.71 0.269472
Target:  5'- -gGUUGGCCGCUgccagggaACCGGCCUGGAGc- -3'
miRNA:   3'- caCGACUGGUGG--------UGGCUGGGCCUCua -5'
19051 5' -59.5 NC_004684.1 + 37642 0.71 0.269472
Target:  5'- -cGCUGGCCAUgGCCG-CCCGGucAGGc -3'
miRNA:   3'- caCGACUGGUGgUGGCuGGGCC--UCUa -5'
19051 5' -59.5 NC_004684.1 + 3021 0.71 0.276179
Target:  5'- gGUGCUGAUCACCgagggGCCGcacaacgagGCCCGGGuGGUg -3'
miRNA:   3'- -CACGACUGGUGG-----UGGC---------UGGGCCU-CUA- -5'
19051 5' -59.5 NC_004684.1 + 48488 0.7 0.311712
Target:  5'- aUGCgccgcGACC-CCGCCGACgUGGAGGa -3'
miRNA:   3'- cACGa----CUGGuGGUGGCUGgGCCUCUa -5'
19051 5' -59.5 NC_004684.1 + 55556 0.7 0.326868
Target:  5'- -cGCUGGCCGCCGuggcCCGGuggCCGGGGGUc -3'
miRNA:   3'- caCGACUGGUGGU----GGCUg--GGCCUCUA- -5'
19051 5' -59.5 NC_004684.1 + 17548 0.7 0.326868
Target:  5'- cGUGCUGAUC-CCGCCGuccucgcguCCCGaGGGAc -3'
miRNA:   3'- -CACGACUGGuGGUGGCu--------GGGC-CUCUa -5'
19051 5' -59.5 NC_004684.1 + 56486 0.69 0.334648
Target:  5'- cUGCUcGGCCugUacgcGCCGACCCGGGuGGUc -3'
miRNA:   3'- cACGA-CUGGugG----UGGCUGGGCCU-CUA- -5'
19051 5' -59.5 NC_004684.1 + 44467 0.69 0.334648
Target:  5'- -cGCUGGCCACCugCGugCgCGuGGAc -3'
miRNA:   3'- caCGACUGGUGGugGCugG-GCcUCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.