miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19051 5' -59.5 NC_004684.1 + 536 0.68 0.401673
Target:  5'- cGUGCUGGCCagcgcggucgagGCCGCC-ACCgaGGAGGa -3'
miRNA:   3'- -CACGACUGG------------UGGUGGcUGGg-CCUCUa -5'
19051 5' -59.5 NC_004684.1 + 599 0.73 0.204162
Target:  5'- -aGCUGACCuccggGCCGCCuGACCUGGAcGAc -3'
miRNA:   3'- caCGACUGG-----UGGUGG-CUGGGCCU-CUa -5'
19051 5' -59.5 NC_004684.1 + 2079 0.66 0.541253
Target:  5'- -cGCUGGCCguggugcacagcgagGCCGCCGucgcguUCUGGGGAa -3'
miRNA:   3'- caCGACUGG---------------UGGUGGCu-----GGGCCUCUa -5'
19051 5' -59.5 NC_004684.1 + 2306 0.67 0.470763
Target:  5'- gGUGCUGACCGCCGugcacgUCGgugaccacgccgucuACCCGGAc-- -3'
miRNA:   3'- -CACGACUGGUGGU------GGC---------------UGGGCCUcua -5'
19051 5' -59.5 NC_004684.1 + 3021 0.71 0.276179
Target:  5'- gGUGCUGAUCACCgagggGCCGcacaacgagGCCCGGGuGGUg -3'
miRNA:   3'- -CACGACUGGUGG-----UGGC---------UGGGCCU-CUA- -5'
19051 5' -59.5 NC_004684.1 + 3034 0.69 0.358795
Target:  5'- -aGCUGACCG-CGCCGACCgGGuucaaGGAc -3'
miRNA:   3'- caCGACUGGUgGUGGCUGGgCC-----UCUa -5'
19051 5' -59.5 NC_004684.1 + 4509 0.77 0.11072
Target:  5'- -aGCUGGCgGCCACCgugGACCCGGGGu- -3'
miRNA:   3'- caCGACUGgUGGUGG---CUGGGCCUCua -5'
19051 5' -59.5 NC_004684.1 + 5936 0.66 0.510532
Target:  5'- -cGCUGGCCACCgggcgguccaaccugGCCG-CgCCGGuGAg -3'
miRNA:   3'- caCGACUGGUGG---------------UGGCuG-GGCCuCUa -5'
19051 5' -59.5 NC_004684.1 + 6057 0.68 0.426142
Target:  5'- -aGCUGACCaACCacgccgcgcugguaGCCGAUgCCGGGGGc -3'
miRNA:   3'- caCGACUGG-UGG--------------UGGCUG-GGCCUCUa -5'
19051 5' -59.5 NC_004684.1 + 6208 0.66 0.537119
Target:  5'- -cGCcgaGGCCACCaaccccGCCGACCUGGccGGGUg -3'
miRNA:   3'- caCGa--CUGGUGG------UGGCUGGGCC--UCUA- -5'
19051 5' -59.5 NC_004684.1 + 7123 0.66 0.50649
Target:  5'- -cGCaaccGCCACCGCCGAgguacaCCCGGaAGGUg -3'
miRNA:   3'- caCGac--UGGUGGUGGCU------GGGCC-UCUA- -5'
19051 5' -59.5 NC_004684.1 + 7510 0.69 0.36711
Target:  5'- -cGCUGGCCGCCGCgcgcgUGACCCGacuGAUc -3'
miRNA:   3'- caCGACUGGUGGUG-----GCUGGGCcu-CUA- -5'
19051 5' -59.5 NC_004684.1 + 8729 0.69 0.375557
Target:  5'- -cGCUGAucccgauguUCGCCGCCGcGCCCGGcGAg -3'
miRNA:   3'- caCGACU---------GGUGGUGGC-UGGGCCuCUa -5'
19051 5' -59.5 NC_004684.1 + 10012 0.66 0.50649
Target:  5'- cUGCcgGACCugCcgcgcGCCGACCgGGAGc- -3'
miRNA:   3'- cACGa-CUGGugG-----UGGCUGGgCCUCua -5'
19051 5' -59.5 NC_004684.1 + 10232 0.72 0.231969
Target:  5'- cGUGCgcgucGGCCACCGCCG-CCaUGGAGGc -3'
miRNA:   3'- -CACGa----CUGGUGGUGGCuGG-GCCUCUa -5'
19051 5' -59.5 NC_004684.1 + 10334 0.75 0.145074
Target:  5'- -cGCaGGCCGCCAUCGACCCcgccGGGGAg -3'
miRNA:   3'- caCGaCUGGUGGUGGCUGGG----CCUCUa -5'
19051 5' -59.5 NC_004684.1 + 10466 0.67 0.466872
Target:  5'- aGUGCUgGAUCGCCACUaucgacggcaaGACCCGGccGAc -3'
miRNA:   3'- -CACGA-CUGGUGGUGG-----------CUGGGCCu-CUa -5'
19051 5' -59.5 NC_004684.1 + 11162 0.66 0.530938
Target:  5'- gGUGgacCUGGCCGCCagcgagugggucaugACCGACCgGGAcGAg -3'
miRNA:   3'- -CAC---GACUGGUGG---------------UGGCUGGgCCU-CUa -5'
19051 5' -59.5 NC_004684.1 + 12088 0.68 0.383271
Target:  5'- gGUGCUGGCCcgcgcggcgGCCAucacgcaacccCCGACCCcggcugaGGAGAUc -3'
miRNA:   3'- -CACGACUGG---------UGGU-----------GGCUGGG-------CCUCUA- -5'
19051 5' -59.5 NC_004684.1 + 14282 0.69 0.342563
Target:  5'- -cGCUGACCaacACCGCCGAgUCGGGc-- -3'
miRNA:   3'- caCGACUGG---UGGUGGCUgGGCCUcua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.