miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19052 3' -53.3 NC_004684.1 + 60641 0.67 0.769637
Target:  5'- cGCagggUCGAGGGggcagGUGCCAGGaugucgccuaccuCCAGCu -3'
miRNA:   3'- -CGga--AGUUUCCa----CAUGGUCC-------------GGUCGu -5'
19052 3' -53.3 NC_004684.1 + 63489 0.67 0.760363
Target:  5'- gGUCUUCccgguacccggAGAGGaUGUcugACCAGGCCuuGGCAc -3'
miRNA:   3'- -CGGAAG-----------UUUCC-ACA---UGGUCCGG--UCGU- -5'
19052 3' -53.3 NC_004684.1 + 58231 0.67 0.760363
Target:  5'- aGUCguaGAcGGUGUcgucgGCCAGGCCgAGCAu -3'
miRNA:   3'- -CGGaagUUuCCACA-----UGGUCCGG-UCGU- -5'
19052 3' -53.3 NC_004684.1 + 52127 0.68 0.739376
Target:  5'- gGCCacc-AGGGUGUugGCCAGGCCAuCGa -3'
miRNA:   3'- -CGGaaguUUCCACA--UGGUCCGGUcGU- -5'
19052 3' -53.3 NC_004684.1 + 54032 0.68 0.728711
Target:  5'- gGCCUUCGuggcGGGUGUGCCc-GCC-GUAg -3'
miRNA:   3'- -CGGAAGUu---UCCACAUGGucCGGuCGU- -5'
19052 3' -53.3 NC_004684.1 + 37555 0.68 0.728711
Target:  5'- cGCCggUGGAcccGGUGUACCGGGagcuggaggugcCCGGCAu -3'
miRNA:   3'- -CGGaaGUUU---CCACAUGGUCC------------GGUCGU- -5'
19052 3' -53.3 NC_004684.1 + 18381 0.68 0.728711
Target:  5'- gGCCgaucugUUCAGcgGGGUcggGCCcGGCCAGCAg -3'
miRNA:   3'- -CGG------AAGUU--UCCAca-UGGuCCGGUCGU- -5'
19052 3' -53.3 NC_004684.1 + 467 0.68 0.717946
Target:  5'- gGCCUUCGccGAGGuUGUggccGCCaAGGCCGcGCc -3'
miRNA:   3'- -CGGAAGU--UUCC-ACA----UGG-UCCGGU-CGu -5'
19052 3' -53.3 NC_004684.1 + 2003 0.68 0.716865
Target:  5'- gGCCUgggCGcuGGaccgccccgacguUG-ACCAGGCCAGCGc -3'
miRNA:   3'- -CGGAa--GUuuCC-------------ACaUGGUCCGGUCGU- -5'
19052 3' -53.3 NC_004684.1 + 31695 0.68 0.707095
Target:  5'- aCCgUCGAucauGGUG-ACCGGGuCCGGCGa -3'
miRNA:   3'- cGGaAGUUu---CCACaUGGUCC-GGUCGU- -5'
19052 3' -53.3 NC_004684.1 + 59441 0.68 0.707095
Target:  5'- gGCCUUgccCAccGGUGUGCgCcGGUCGGCGg -3'
miRNA:   3'- -CGGAA---GUuuCCACAUG-GuCCGGUCGU- -5'
19052 3' -53.3 NC_004684.1 + 17399 0.69 0.696169
Target:  5'- cCCggUCAGAuuguggauGGUGUGCCGGuGCaCAGCGa -3'
miRNA:   3'- cGGa-AGUUU--------CCACAUGGUC-CG-GUCGU- -5'
19052 3' -53.3 NC_004684.1 + 26345 0.69 0.685179
Target:  5'- uGCCUUCGucGGUGUaguGCCGugcguuGUCGGCAg -3'
miRNA:   3'- -CGGAAGUuuCCACA---UGGUc-----CGGUCGU- -5'
19052 3' -53.3 NC_004684.1 + 49507 0.69 0.674137
Target:  5'- cGCg-UCGGGGGUGUAgCGGcCCAGCGu -3'
miRNA:   3'- -CGgaAGUUUCCACAUgGUCcGGUCGU- -5'
19052 3' -53.3 NC_004684.1 + 25860 0.69 0.663055
Target:  5'- gGCCUguUCAAcGGccucgGCCAGGCCGGgCAg -3'
miRNA:   3'- -CGGA--AGUUuCCaca--UGGUCCGGUC-GU- -5'
19052 3' -53.3 NC_004684.1 + 35070 0.69 0.663055
Target:  5'- cGCCgaauggUCGuuGGUGUGCaccggcguCAGGCaCAGCGc -3'
miRNA:   3'- -CGGa-----AGUuuCCACAUG--------GUCCG-GUCGU- -5'
19052 3' -53.3 NC_004684.1 + 60117 0.69 0.640812
Target:  5'- uCCggaaCGAAGGUGUgACCGGGUCGcGCAc -3'
miRNA:   3'- cGGaa--GUUUCCACA-UGGUCCGGU-CGU- -5'
19052 3' -53.3 NC_004684.1 + 63878 0.69 0.640812
Target:  5'- gGCCUUCAucGGgcccagcgGUGCCAGGugguCCAGg- -3'
miRNA:   3'- -CGGAAGUuuCCa-------CAUGGUCC----GGUCgu -5'
19052 3' -53.3 NC_004684.1 + 7641 0.7 0.629673
Target:  5'- cGCCguggCGGgcguGGUG-ACCGGGUCGGCGg -3'
miRNA:   3'- -CGGaa--GUUu---CCACaUGGUCCGGUCGU- -5'
19052 3' -53.3 NC_004684.1 + 2795 0.7 0.607412
Target:  5'- aGCCggaaccgCAAcuGGUcgacGUACCGGGCCGGUAc -3'
miRNA:   3'- -CGGaa-----GUUu-CCA----CAUGGUCCGGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.