miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19052 5' -57.4 NC_004684.1 + 4886 0.66 0.644953
Target:  5'- gGCgGCUcaGGCGgcCUGGUCGCCa----- -3'
miRNA:   3'- -UGgCGA--CCGCa-GACCAGCGGaaacua -5'
19052 5' -57.4 NC_004684.1 + 57122 0.66 0.638443
Target:  5'- gACCGCUGGCagcacuggcgcggCUGGuUCGCCUccaUGGc -3'
miRNA:   3'- -UGGCGACCGca-----------GACC-AGCGGAa--ACUa -5'
19052 5' -57.4 NC_004684.1 + 28855 0.67 0.569272
Target:  5'- -gCGCUGGCGUCUcccGGUCGgCauagUGGg -3'
miRNA:   3'- ugGCGACCGCAGA---CCAGCgGaa--ACUa -5'
19052 5' -57.4 NC_004684.1 + 41232 0.67 0.569272
Target:  5'- aGCUGCUGGC--CUGGUacaCCUUUGAa -3'
miRNA:   3'- -UGGCGACCGcaGACCAgc-GGAAACUa -5'
19052 5' -57.4 NC_004684.1 + 66650 0.67 0.558594
Target:  5'- cGCCGCcagGGCGUCgGuGUCGUCgg-GGUa -3'
miRNA:   3'- -UGGCGa--CCGCAGaC-CAGCGGaaaCUA- -5'
19052 5' -57.4 NC_004684.1 + 2870 0.67 0.547973
Target:  5'- aGCCGCUgGGCGUCaucGGU-GCCUggUGGc -3'
miRNA:   3'- -UGGCGA-CCGCAGa--CCAgCGGAa-ACUa -5'
19052 5' -57.4 NC_004684.1 + 53607 0.67 0.5448
Target:  5'- cACCGCgcuggaGGCGcaggUUGGUCGCCUggagcgccaggccgUUGAg -3'
miRNA:   3'- -UGGCGa-----CCGCa---GACCAGCGGA--------------AACUa -5'
19052 5' -57.4 NC_004684.1 + 66120 0.67 0.537417
Target:  5'- cGCgUGCUGGCGaagUGGUCGCCggugucgUUGGUc -3'
miRNA:   3'- -UG-GCGACCGCag-ACCAGCGGa------AACUA- -5'
19052 5' -57.4 NC_004684.1 + 51702 0.67 0.526932
Target:  5'- uGCCGgUGGCGUC-GGUgcCGCCgcUGGc -3'
miRNA:   3'- -UGGCgACCGCAGaCCA--GCGGaaACUa -5'
19052 5' -57.4 NC_004684.1 + 7543 0.69 0.456019
Target:  5'- gGCCGCcgUGGCGgcguUCUGGuUCGCCUa---- -3'
miRNA:   3'- -UGGCG--ACCGC----AGACC-AGCGGAaacua -5'
19052 5' -57.4 NC_004684.1 + 11939 0.69 0.427227
Target:  5'- uCCGCUGGCca-UGGUCGCCa----- -3'
miRNA:   3'- uGGCGACCGcagACCAGCGGaaacua -5'
19052 5' -57.4 NC_004684.1 + 28893 0.71 0.347736
Target:  5'- cGCCGUcGGCGUC-GGUgGCCUUgcUGAc -3'
miRNA:   3'- -UGGCGaCCGCAGaCCAgCGGAA--ACUa -5'
19052 5' -57.4 NC_004684.1 + 55192 0.72 0.286423
Target:  5'- cACCGCUGGCGgcggcgCUGGaUGCCUacGAg -3'
miRNA:   3'- -UGGCGACCGCa-----GACCaGCGGAaaCUa -5'
19052 5' -57.4 NC_004684.1 + 26187 1.05 0.001395
Target:  5'- cACCGCUGGCGUCUGGUCGCCUUUGAUc -3'
miRNA:   3'- -UGGCGACCGCAGACCAGCGGAAACUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.