miRNA display CGI


Results 21 - 40 of 386 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19053 3' -65.2 NC_004684.1 + 50108 0.66 0.311027
Target:  5'- cCGGCcagaaaaccaGCGCCGCCGagcaguugcaggACCAgCGCCGCc -3'
miRNA:   3'- -GCCGc---------CGUGGCGGCg-----------UGGUgGCGGUG- -5'
19053 3' -65.2 NC_004684.1 + 11272 0.66 0.311027
Target:  5'- uGGCcucccguacgucGUACaaCCGUGCCACCGCCACc -3'
miRNA:   3'- gCCGc-----------CGUGgcGGCGUGGUGGCGGUG- -5'
19053 3' -65.2 NC_004684.1 + 5099 0.66 0.310317
Target:  5'- cCGcGCGGCGCUGgaGCAgCGCCuggaccugcugaagGCCACc -3'
miRNA:   3'- -GC-CGCCGUGGCggCGUgGUGG--------------CGGUG- -5'
19053 3' -65.2 NC_004684.1 + 44991 0.66 0.308194
Target:  5'- gGGCuGGUuaggaauccgccgacGCCGCCuGCAcguCCACCGCCn- -3'
miRNA:   3'- gCCG-CCG---------------UGGCGG-CGU---GGUGGCGGug -5'
19053 3' -65.2 NC_004684.1 + 7279 0.66 0.30538
Target:  5'- aGGCGagaccaguuCAUCGCCGCACUGCa-CCACg -3'
miRNA:   3'- gCCGCc--------GUGGCGGCGUGGUGgcGGUG- -5'
19053 3' -65.2 NC_004684.1 + 34480 0.66 0.30538
Target:  5'- aGGUccGGCACCGCCGaggaCACCcCCGa -3'
miRNA:   3'- gCCG--CCGUGGCGGCgug-GUGGcGGUg -5'
19053 3' -65.2 NC_004684.1 + 35666 0.66 0.30538
Target:  5'- uCGGCGGCGgUGUguCGCCACCGgCGa -3'
miRNA:   3'- -GCCGCCGUgGCGgcGUGGUGGCgGUg -5'
19053 3' -65.2 NC_004684.1 + 26947 0.66 0.30538
Target:  5'- gCGGCcgccugGGCACCGCUG-ACCAagGCCGg -3'
miRNA:   3'- -GCCG------CCGUGGCGGCgUGGUggCGGUg -5'
19053 3' -65.2 NC_004684.1 + 19303 0.66 0.30538
Target:  5'- gCGaGCGaGCaggaACagGCCGCAUaCGCCGCCGCc -3'
miRNA:   3'- -GC-CGC-CG----UGg-CGGCGUG-GUGGCGGUG- -5'
19053 3' -65.2 NC_004684.1 + 5684 0.66 0.30538
Target:  5'- cCGGUGGCAUccugaCGCCgguggagcagcGCGCCcuCgCGCCGCa -3'
miRNA:   3'- -GCCGCCGUG-----GCGG-----------CGUGGu-G-GCGGUG- -5'
19053 3' -65.2 NC_004684.1 + 20429 0.66 0.301197
Target:  5'- uGGUGGCAgCCGCUGCGuugcaucaucCCgaacgggucacccacACCGCCGu -3'
miRNA:   3'- gCCGCCGU-GGCGGCGU----------GG---------------UGGCGGUg -5'
19053 3' -65.2 NC_004684.1 + 40176 0.66 0.298433
Target:  5'- uGGCGGCGaagcucaugCGCUGC-UCGCUGUCGCu -3'
miRNA:   3'- gCCGCCGUg--------GCGGCGuGGUGGCGGUG- -5'
19053 3' -65.2 NC_004684.1 + 17851 0.66 0.298433
Target:  5'- aGGUGuGCgucACCGaCCGCA-CGCCGCCu- -3'
miRNA:   3'- gCCGC-CG---UGGC-GGCGUgGUGGCGGug -5'
19053 3' -65.2 NC_004684.1 + 55289 0.66 0.298433
Target:  5'- uCGGgGGUugcgugaugGCCGCCGCgcggGCCAgcaccUCGUCGCg -3'
miRNA:   3'- -GCCgCCG---------UGGCGGCG----UGGU-----GGCGGUG- -5'
19053 3' -65.2 NC_004684.1 + 11911 0.66 0.298433
Target:  5'- uGcGCGGCACCaCCGacaGCCaggGCCGuCCGCn -3'
miRNA:   3'- gC-CGCCGUGGcGGCg--UGG---UGGC-GGUG- -5'
19053 3' -65.2 NC_004684.1 + 37775 0.66 0.298433
Target:  5'- -cGCGGUGCaGCUGCA-CGCCGCUGCc -3'
miRNA:   3'- gcCGCCGUGgCGGCGUgGUGGCGGUG- -5'
19053 3' -65.2 NC_004684.1 + 56535 0.66 0.298433
Target:  5'- uCGcCGGUAUCGCUGUcgucuGCCAUUGCCAUc -3'
miRNA:   3'- -GCcGCCGUGGCGGCG-----UGGUGGCGGUG- -5'
19053 3' -65.2 NC_004684.1 + 63697 0.66 0.298433
Target:  5'- gCGGCGGCGCUGgCG-AUCucCUGCCAg -3'
miRNA:   3'- -GCCGCCGUGGCgGCgUGGu-GGCGGUg -5'
19053 3' -65.2 NC_004684.1 + 1415 0.66 0.298433
Target:  5'- gGGCGGCugaGCCuGCGcgacCCGCUGuCCACg -3'
miRNA:   3'- gCCGCCGuggCGG-CGU----GGUGGC-GGUG- -5'
19053 3' -65.2 NC_004684.1 + 21523 0.66 0.297745
Target:  5'- aCGGCGcGCACaugauCGCCGaCGCCAUcaacgagCGCgGCa -3'
miRNA:   3'- -GCCGC-CGUG-----GCGGC-GUGGUG-------GCGgUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.