miRNA display CGI


Results 21 - 40 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19053 5' -53.5 NC_004684.1 + 30319 0.66 0.865773
Target:  5'- gCACCGCGAacaGGcAGG-CGAucuGCUg -3'
miRNA:   3'- gGUGGCGCUg--CCaUCCaGCUuauCGG- -5'
19053 5' -53.5 NC_004684.1 + 55281 0.67 0.857755
Target:  5'- -aGCCGgGGuCGG-GGGUUGcguGAUGGCCg -3'
miRNA:   3'- ggUGGCgCU-GCCaUCCAGC---UUAUCGG- -5'
19053 5' -53.5 NC_004684.1 + 19323 0.67 0.857755
Target:  5'- aCGCCG-GAacCGGU-GGUCGAAaccGCCa -3'
miRNA:   3'- gGUGGCgCU--GCCAuCCAGCUUau-CGG- -5'
19053 5' -53.5 NC_004684.1 + 36850 0.67 0.857755
Target:  5'- aCAcCCGCGACu---GGUCGG--AGCCg -3'
miRNA:   3'- gGU-GGCGCUGccauCCAGCUuaUCGG- -5'
19053 5' -53.5 NC_004684.1 + 15001 0.67 0.857755
Target:  5'- gCCugCGCGAgcaGGUcauGGUCGAGcgggaguucGCCg -3'
miRNA:   3'- -GGugGCGCUg--CCAu--CCAGCUUau-------CGG- -5'
19053 5' -53.5 NC_004684.1 + 65457 0.67 0.857755
Target:  5'- gCCACCGUGcgcCGGUaccAGGccCGGcaGGCCg -3'
miRNA:   3'- -GGUGGCGCu--GCCA---UCCa-GCUuaUCGG- -5'
19053 5' -53.5 NC_004684.1 + 49534 0.67 0.857755
Target:  5'- gCACC-CGGCGGUGuG-CGcGGUGGCCg -3'
miRNA:   3'- gGUGGcGCUGCCAUcCaGC-UUAUCGG- -5'
19053 5' -53.5 NC_004684.1 + 36119 0.67 0.84951
Target:  5'- gCCGCCGaCGauGCGGUuccAGGUguccCGGA-GGCCg -3'
miRNA:   3'- -GGUGGC-GC--UGCCA---UCCA----GCUUaUCGG- -5'
19053 5' -53.5 NC_004684.1 + 41864 0.67 0.84951
Target:  5'- gCACCGaccCGGCGucGgcGGUCGAGaacAGCCg -3'
miRNA:   3'- gGUGGC---GCUGC--CauCCAGCUUa--UCGG- -5'
19053 5' -53.5 NC_004684.1 + 5647 0.67 0.841902
Target:  5'- uUCGcCCGUGGCGGaUuccugccucagccguGGUCGGagGUGGCCg -3'
miRNA:   3'- -GGU-GGCGCUGCC-Au--------------CCAGCU--UAUCGG- -5'
19053 5' -53.5 NC_004684.1 + 60694 0.67 0.841046
Target:  5'- cUCGCgC-CGACGGUggccAGGUCGAccuGUgcaGGCCa -3'
miRNA:   3'- -GGUG-GcGCUGCCA----UCCAGCU---UA---UCGG- -5'
19053 5' -53.5 NC_004684.1 + 56505 0.67 0.841046
Target:  5'- aUCACCGCGuCGGUgaacgugcggaAGGUCuc---GCCg -3'
miRNA:   3'- -GGUGGCGCuGCCA-----------UCCAGcuuauCGG- -5'
19053 5' -53.5 NC_004684.1 + 3405 0.67 0.841046
Target:  5'- aCCGCCGCcaagguGAUGG-AGGUcuaccgcaaggaCGAcaccGUGGCCa -3'
miRNA:   3'- -GGUGGCG------CUGCCaUCCA------------GCU----UAUCGG- -5'
19053 5' -53.5 NC_004684.1 + 61169 0.67 0.841046
Target:  5'- gCCACC-CGGCcaGGUcggcgGGGUUG-GUGGCCu -3'
miRNA:   3'- -GGUGGcGCUG--CCA-----UCCAGCuUAUCGG- -5'
19053 5' -53.5 NC_004684.1 + 57699 0.67 0.841046
Target:  5'- cUCGCCGuCGAUGGUuuuGGUCagcucGCCg -3'
miRNA:   3'- -GGUGGC-GCUGCCAu--CCAGcuuauCGG- -5'
19053 5' -53.5 NC_004684.1 + 63691 0.67 0.841046
Target:  5'- gCCAgCGCGGCGGcgcuGG-CGAucuccuGCCa -3'
miRNA:   3'- -GGUgGCGCUGCCau--CCaGCUuau---CGG- -5'
19053 5' -53.5 NC_004684.1 + 8035 0.67 0.835866
Target:  5'- aCACCGUGcGCGuGUucaacaccaacggccGGGUcguggcCGAGUGGCCa -3'
miRNA:   3'- gGUGGCGC-UGC-CA---------------UCCA------GCUUAUCGG- -5'
19053 5' -53.5 NC_004684.1 + 34821 0.67 0.833248
Target:  5'- aCCACCGaCGACGGc-GGUCugcugcgcaugcAGCCg -3'
miRNA:   3'- -GGUGGC-GCUGCCauCCAGcuua--------UCGG- -5'
19053 5' -53.5 NC_004684.1 + 39154 0.67 0.832371
Target:  5'- uCCACCGCGcuguGCuccgGGUGGG-CGGccagGUAGCg -3'
miRNA:   3'- -GGUGGCGC----UG----CCAUCCaGCU----UAUCGg -5'
19053 5' -53.5 NC_004684.1 + 56969 0.67 0.832371
Target:  5'- -gACUGCaaGGCGGU-GGUCaGGAUGGCg -3'
miRNA:   3'- ggUGGCG--CUGCCAuCCAG-CUUAUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.