miRNA display CGI


Results 1 - 20 of 279 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19054 5' -57.9 NC_004684.1 + 668 0.66 0.65749
Target:  5'- cGCaCGACagcgUGCGCCugauccucggccccgAGGuca-GCCGCCg -3'
miRNA:   3'- -CG-GCUGg---ACGCGG---------------UCCuuuaCGGCGG- -5'
19054 5' -57.9 NC_004684.1 + 15035 0.66 0.653239
Target:  5'- cGCCGACCgGCuCCuGGAcgacGUGgggaCGCCg -3'
miRNA:   3'- -CGGCUGGaCGcGGuCCUu---UACg---GCGG- -5'
19054 5' -57.9 NC_004684.1 + 61097 0.66 0.653239
Target:  5'- gGUgGACCUG-GaCCAGGAGcugGCCaGCUa -3'
miRNA:   3'- -CGgCUGGACgC-GGUCCUUua-CGG-CGG- -5'
19054 5' -57.9 NC_004684.1 + 12040 0.66 0.653239
Target:  5'- uGCUGuACUgcaugcGCGCCAGGcucaccUGCCaGCCg -3'
miRNA:   3'- -CGGC-UGGa-----CGCGGUCCuuu---ACGG-CGG- -5'
19054 5' -57.9 NC_004684.1 + 54254 0.66 0.653239
Target:  5'- -gCGACgCgagGCGCUgcguGGAGAaGCUGCCg -3'
miRNA:   3'- cgGCUG-Ga--CGCGGu---CCUUUaCGGCGG- -5'
19054 5' -57.9 NC_004684.1 + 62831 0.66 0.653239
Target:  5'- gGCCGACCggGUGUCGGuGAuGGUGUagcggGCCu -3'
miRNA:   3'- -CGGCUGGa-CGCGGUC-CU-UUACGg----CGG- -5'
19054 5' -57.9 NC_004684.1 + 58654 0.66 0.652176
Target:  5'- cGCCGGgCgcgGCGgcgaacaUCGGGAucagcGCCGCCa -3'
miRNA:   3'- -CGGCUgGa--CGC-------GGUCCUuua--CGGCGG- -5'
19054 5' -57.9 NC_004684.1 + 55877 0.66 0.650049
Target:  5'- gGCCcACCgagcGUGCCGGGAGucccagcaggcgauGUGCCcgaacacccgGCCg -3'
miRNA:   3'- -CGGcUGGa---CGCGGUCCUU--------------UACGG----------CGG- -5'
19054 5' -57.9 NC_004684.1 + 12809 0.66 0.6426
Target:  5'- cGCCGACgacGCGCCcgAGGAcg-GCgGCUc -3'
miRNA:   3'- -CGGCUGga-CGCGG--UCCUuuaCGgCGG- -5'
19054 5' -57.9 NC_004684.1 + 65884 0.66 0.6426
Target:  5'- cGuuGAgCgcgGCGCgCAGGuuGgccaccaggGCCGCCg -3'
miRNA:   3'- -CggCUgGa--CGCG-GUCCuuUa--------CGGCGG- -5'
19054 5' -57.9 NC_004684.1 + 48014 0.66 0.6426
Target:  5'- cGUCaGGcCCUGCuCCGGGAAccGCUGCg -3'
miRNA:   3'- -CGG-CU-GGACGcGGUCCUUuaCGGCGg -5'
19054 5' -57.9 NC_004684.1 + 7378 0.66 0.6426
Target:  5'- uCCGAgCUGUGCUGGuGGAUG-CGCCc -3'
miRNA:   3'- cGGCUgGACGCGGUCcUUUACgGCGG- -5'
19054 5' -57.9 NC_004684.1 + 15133 0.66 0.6426
Target:  5'- cGCUgGGCCUGauccaCGCCAGcGcgcagcugGCCGCCg -3'
miRNA:   3'- -CGG-CUGGAC-----GCGGUC-Cuuua----CGGCGG- -5'
19054 5' -57.9 NC_004684.1 + 47061 0.66 0.6426
Target:  5'- gGCCGACaUGCccggcccauuGCCAGGGcaccagaacggcGGUGCCGg- -3'
miRNA:   3'- -CGGCUGgACG----------CGGUCCU------------UUACGGCgg -5'
19054 5' -57.9 NC_004684.1 + 2384 0.66 0.6426
Target:  5'- gGCC-ACCUuCGCCGGGugcggcGUGCaCGUCg -3'
miRNA:   3'- -CGGcUGGAcGCGGUCCuu----UACG-GCGG- -5'
19054 5' -57.9 NC_004684.1 + 51468 0.66 0.6426
Target:  5'- cGCCaGGCUccgGUGCCGGGuag-GCCucuGCCg -3'
miRNA:   3'- -CGG-CUGGa--CGCGGUCCuuuaCGG---CGG- -5'
19054 5' -57.9 NC_004684.1 + 57300 0.66 0.6426
Target:  5'- cGCCGguguggcugagcACCcgGCGCaccacGGggGUGUCGUCa -3'
miRNA:   3'- -CGGC------------UGGa-CGCGgu---CCuuUACGGCGG- -5'
19054 5' -57.9 NC_004684.1 + 5905 0.66 0.636212
Target:  5'- cGCCGccGCCUGCGCggcgacaucgacUAGGuggcacgcgagcaccGgcggcgagacAAUGCCGCCg -3'
miRNA:   3'- -CGGC--UGGACGCG------------GUCC---------------U----------UUACGGCGG- -5'
19054 5' -57.9 NC_004684.1 + 19446 0.66 0.633017
Target:  5'- aGCCGugCcGaCGCCAccaaggccuGGAAGcagaagguggccgagGCCGCCg -3'
miRNA:   3'- -CGGCugGaC-GCGGU---------CCUUUa--------------CGGCGG- -5'
19054 5' -57.9 NC_004684.1 + 60605 0.66 0.631952
Target:  5'- gGCCGucguCCaGUGCaccGGcGAUGCCGUCg -3'
miRNA:   3'- -CGGCu---GGaCGCGgu-CCuUUACGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.