miRNA display CGI


Results 1 - 20 of 279 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19054 5' -57.9 NC_004684.1 + 56887 0.66 0.621304
Target:  5'- cCCGcACCUugGCgAGGAGGccaagGCCGCCa -3'
miRNA:   3'- cGGC-UGGAcgCGgUCCUUUa----CGGCGG- -5'
19054 5' -57.9 NC_004684.1 + 62831 0.66 0.653239
Target:  5'- gGCCGACCggGUGUCGGuGAuGGUGUagcggGCCu -3'
miRNA:   3'- -CGGCUGGa-CGCGGUC-CU-UUACGg----CGG- -5'
19054 5' -57.9 NC_004684.1 + 48014 0.66 0.6426
Target:  5'- cGUCaGGcCCUGCuCCGGGAAccGCUGCg -3'
miRNA:   3'- -CGG-CU-GGACGcGGUCCUUuaCGGCGg -5'
19054 5' -57.9 NC_004684.1 + 2384 0.66 0.6426
Target:  5'- gGCC-ACCUuCGCCGGGugcggcGUGCaCGUCg -3'
miRNA:   3'- -CGGcUGGAcGCGGUCCuu----UACG-GCGG- -5'
19054 5' -57.9 NC_004684.1 + 20728 0.66 0.621304
Target:  5'- cCCGAacCCgaggaGCGCCuGGAGgcaccgcaggcgGUGCCGUCc -3'
miRNA:   3'- cGGCU--GGa----CGCGGuCCUU------------UACGGCGG- -5'
19054 5' -57.9 NC_004684.1 + 15035 0.66 0.653239
Target:  5'- cGCCGACCgGCuCCuGGAcgacGUGgggaCGCCg -3'
miRNA:   3'- -CGGCUGGaCGcGGuCCUu---UACg---GCGG- -5'
19054 5' -57.9 NC_004684.1 + 1137 0.66 0.621304
Target:  5'- -aCGGCCacgGCauGCCGGGc-GUGCCGaCCg -3'
miRNA:   3'- cgGCUGGa--CG--CGGUCCuuUACGGC-GG- -5'
19054 5' -57.9 NC_004684.1 + 47061 0.66 0.6426
Target:  5'- gGCCGACaUGCccggcccauuGCCAGGGcaccagaacggcGGUGCCGg- -3'
miRNA:   3'- -CGGCUGgACG----------CGGUCCU------------UUACGGCgg -5'
19054 5' -57.9 NC_004684.1 + 65884 0.66 0.6426
Target:  5'- cGuuGAgCgcgGCGCgCAGGuuGgccaccaggGCCGCCg -3'
miRNA:   3'- -CggCUgGa--CGCG-GUCCuuUa--------CGGCGG- -5'
19054 5' -57.9 NC_004684.1 + 29420 0.66 0.631952
Target:  5'- cGUCGACCccaucgUGCGCCcGGAc---CCGCUg -3'
miRNA:   3'- -CGGCUGG------ACGCGGuCCUuuacGGCGG- -5'
19054 5' -57.9 NC_004684.1 + 54029 0.66 0.610665
Target:  5'- cUCGGCCUucGUGgCGGGu-GUGCcCGCCg -3'
miRNA:   3'- cGGCUGGA--CGCgGUCCuuUACG-GCGG- -5'
19054 5' -57.9 NC_004684.1 + 52447 0.66 0.628757
Target:  5'- uGUCGGCC-GCcaCCGGGAugcccgacggcaugGCCGCCa -3'
miRNA:   3'- -CGGCUGGaCGc-GGUCCUuua-----------CGGCGG- -5'
19054 5' -57.9 NC_004684.1 + 53422 0.66 0.610665
Target:  5'- gGUCuGCCUGCGUCAGGAcgaucaccgAggGCCcCCc -3'
miRNA:   3'- -CGGcUGGACGCGGUCCU---------UuaCGGcGG- -5'
19054 5' -57.9 NC_004684.1 + 6835 0.66 0.610665
Target:  5'- aGCUGGCCUacgGCGCgaAGGGcgacgccgugguGGUGCUGCa -3'
miRNA:   3'- -CGGCUGGA---CGCGg-UCCU------------UUACGGCGg -5'
19054 5' -57.9 NC_004684.1 + 54254 0.66 0.653239
Target:  5'- -gCGACgCgagGCGCUgcguGGAGAaGCUGCCg -3'
miRNA:   3'- cgGCUG-Ga--CGCGGu---CCUUUaCGGCGG- -5'
19054 5' -57.9 NC_004684.1 + 7378 0.66 0.6426
Target:  5'- uCCGAgCUGUGCUGGuGGAUG-CGCCc -3'
miRNA:   3'- cGGCUgGACGCGGUCcUUUACgGCGG- -5'
19054 5' -57.9 NC_004684.1 + 668 0.66 0.65749
Target:  5'- cGCaCGACagcgUGCGCCugauccucggccccgAGGuca-GCCGCCg -3'
miRNA:   3'- -CG-GCUGg---ACGCGG---------------UCCuuuaCGGCGG- -5'
19054 5' -57.9 NC_004684.1 + 31880 0.66 0.610665
Target:  5'- cGCCGACgUGCugguggacGCCGGGAcguUGuUCGCg -3'
miRNA:   3'- -CGGCUGgACG--------CGGUCCUuu-AC-GGCGg -5'
19054 5' -57.9 NC_004684.1 + 31760 0.66 0.625562
Target:  5'- cGUCGGCCUGUacGCCaucgaccccgagaccGGGAAcAUGgCGCUg -3'
miRNA:   3'- -CGGCUGGACG--CGG---------------UCCUU-UACgGCGG- -5'
19054 5' -57.9 NC_004684.1 + 12809 0.66 0.6426
Target:  5'- cGCCGACgacGCGCCcgAGGAcg-GCgGCUc -3'
miRNA:   3'- -CGGCUGga-CGCGG--UCCUuuaCGgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.