miRNA display CGI


Results 1 - 20 of 279 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19054 5' -57.9 NC_004684.1 + 297 0.67 0.600043
Target:  5'- aCCGAUCUGUGCCAacaucGGGAccaagaccggGCgGCCc -3'
miRNA:   3'- cGGCUGGACGCGGU-----CCUUua--------CGgCGG- -5'
19054 5' -57.9 NC_004684.1 + 460 0.74 0.2379
Target:  5'- cGCCGgagGCCUuCGCCgAGGuuGUgGCCGCCa -3'
miRNA:   3'- -CGGC---UGGAcGCGG-UCCuuUA-CGGCGG- -5'
19054 5' -57.9 NC_004684.1 + 530 0.7 0.410632
Target:  5'- cGCUGACgUGCugGCCAGcGcgGUcgagGCCGCCa -3'
miRNA:   3'- -CGGCUGgACG--CGGUC-CuuUA----CGGCGG- -5'
19054 5' -57.9 NC_004684.1 + 668 0.66 0.65749
Target:  5'- cGCaCGACagcgUGCGCCugauccucggccccgAGGuca-GCCGCCg -3'
miRNA:   3'- -CG-GCUGg---ACGCGG---------------UCCuuuaCGGCGG- -5'
19054 5' -57.9 NC_004684.1 + 710 0.69 0.457217
Target:  5'- cGCCgggugggaaGACCUGggcacCGCCGGuGAccggGCCGCCg -3'
miRNA:   3'- -CGG---------CUGGAC-----GCGGUC-CUuua-CGGCGG- -5'
19054 5' -57.9 NC_004684.1 + 873 0.67 0.572567
Target:  5'- cGCCGGgCcGCGCUgaAGGcggcccgcgagGCCGCCg -3'
miRNA:   3'- -CGGCUgGaCGCGG--UCCuuua-------CGGCGG- -5'
19054 5' -57.9 NC_004684.1 + 919 0.69 0.428916
Target:  5'- aGCCGccACCgggugGCgGCguGGAGAcaacGCCGCCa -3'
miRNA:   3'- -CGGC--UGGa----CG-CGguCCUUUa---CGGCGG- -5'
19054 5' -57.9 NC_004684.1 + 1137 0.66 0.621304
Target:  5'- -aCGGCCacgGCauGCCGGGc-GUGCCGaCCg -3'
miRNA:   3'- cgGCUGGa--CG--CGGUCCuuUACGGC-GG- -5'
19054 5' -57.9 NC_004684.1 + 1225 0.67 0.600043
Target:  5'- cGUCGGCCUcgGCgGCCuGGucg-GUCGCCc -3'
miRNA:   3'- -CGGCUGGA--CG-CGGuCCuuuaCGGCGG- -5'
19054 5' -57.9 NC_004684.1 + 1406 0.66 0.610665
Target:  5'- aCUGGCCaGCGaCCuGGAGGccUGCCggGCCa -3'
miRNA:   3'- cGGCUGGaCGC-GGuCCUUU--ACGG--CGG- -5'
19054 5' -57.9 NC_004684.1 + 1479 0.71 0.358795
Target:  5'- --aGACCUacGCGCC-GGAGGUGgcCCGCCu -3'
miRNA:   3'- cggCUGGA--CGCGGuCCUUUAC--GGCGG- -5'
19054 5' -57.9 NC_004684.1 + 1999 0.67 0.578884
Target:  5'- uGCUGGCCUGgGCgCuGGA----CCGCCc -3'
miRNA:   3'- -CGGCUGGACgCG-GuCCUuuacGGCGG- -5'
19054 5' -57.9 NC_004684.1 + 2079 0.74 0.243957
Target:  5'- cGCUGGCCgugGUGCaCAGcGAg--GCCGCCg -3'
miRNA:   3'- -CGGCUGGa--CGCG-GUC-CUuuaCGGCGG- -5'
19054 5' -57.9 NC_004684.1 + 2257 0.72 0.319223
Target:  5'- cGCUGAUCagcgcgGCGgCGGGcauUGCCGCCa -3'
miRNA:   3'- -CGGCUGGa-----CGCgGUCCuuuACGGCGG- -5'
19054 5' -57.9 NC_004684.1 + 2384 0.66 0.6426
Target:  5'- gGCC-ACCUuCGCCGGGugcggcGUGCaCGUCg -3'
miRNA:   3'- -CGGcUGGAcGCGGUCCuu----UACG-GCGG- -5'
19054 5' -57.9 NC_004684.1 + 2435 0.72 0.329964
Target:  5'- aUCGACCUGaaccgggccaccgccCGCCAGGcgcucaccGCCGCCa -3'
miRNA:   3'- cGGCUGGAC---------------GCGGUCCuuua----CGGCGG- -5'
19054 5' -57.9 NC_004684.1 + 2705 0.74 0.243957
Target:  5'- gGCCuGGCCgGUGCCGGGGgcaAGUG-CGCCa -3'
miRNA:   3'- -CGG-CUGGaCGCGGUCCU---UUACgGCGG- -5'
19054 5' -57.9 NC_004684.1 + 3215 0.81 0.077384
Target:  5'- cGCCGACgUGCGCCuGGAAgagGUG-CGCCg -3'
miRNA:   3'- -CGGCUGgACGCGGuCCUU---UACgGCGG- -5'
19054 5' -57.9 NC_004684.1 + 3259 0.68 0.48649
Target:  5'- uGCUGGCCUG-GCCGgacaucguGGAcgcacUGCUGCCg -3'
miRNA:   3'- -CGGCUGGACgCGGU--------CCUuu---ACGGCGG- -5'
19054 5' -57.9 NC_004684.1 + 3385 0.78 0.133855
Target:  5'- aGCgCGGCaaGCGCCuGGAGAccGCCGCCa -3'
miRNA:   3'- -CG-GCUGgaCGCGGuCCUUUa-CGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.