miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19055 5' -55.8 NC_004684.1 + 44599 0.66 0.756322
Target:  5'- aCUGGUugaacuuguucACCGGACgcgggaGCGCCGGGGGGa -3'
miRNA:   3'- aGGUCA-----------UGGUCUGg-----UGCGGCUCCUUg -5'
19055 5' -55.8 NC_004684.1 + 41653 0.66 0.756322
Target:  5'- cUCCGGUGCggcguacgaAGGCCGgGCCGAccucGGcAACa -3'
miRNA:   3'- -AGGUCAUGg--------UCUGGUgCGGCU----CC-UUG- -5'
19055 5' -55.8 NC_004684.1 + 46964 0.66 0.756322
Target:  5'- -aCAGcGCCAGGCUgauGCGCC-AGGAGu -3'
miRNA:   3'- agGUCaUGGUCUGG---UGCGGcUCCUUg -5'
19055 5' -55.8 NC_004684.1 + 11832 0.66 0.756322
Target:  5'- cCCGGccACCGGGCCACGgCGGccAGCg -3'
miRNA:   3'- aGGUCa-UGGUCUGGUGCgGCUccUUG- -5'
19055 5' -55.8 NC_004684.1 + 46982 0.66 0.756322
Target:  5'- aCCAGUACCcgaugcGGAagguguucaaCCGggugcCGUCGGGGAACg -3'
miRNA:   3'- aGGUCAUGG------UCU----------GGU-----GCGGCUCCUUG- -5'
19055 5' -55.8 NC_004684.1 + 5448 0.66 0.756322
Target:  5'- aUCCGGUgcACCAGGCC-CGgCG-GGuGCc -3'
miRNA:   3'- -AGGUCA--UGGUCUGGuGCgGCuCCuUG- -5'
19055 5' -55.8 NC_004684.1 + 33237 0.66 0.756322
Target:  5'- gCCGGUGagCAGcACCgugccgcccgagGCGgCGAGGAACg -3'
miRNA:   3'- aGGUCAUg-GUC-UGG------------UGCgGCUCCUUG- -5'
19055 5' -55.8 NC_004684.1 + 2850 0.66 0.756322
Target:  5'- cCCGGUcACCaAGGCCGCcgaGCCGcuGGGCg -3'
miRNA:   3'- aGGUCA-UGG-UCUGGUG---CGGCucCUUG- -5'
19055 5' -55.8 NC_004684.1 + 27748 0.66 0.755309
Target:  5'- gCCGGUACCuggagguGACCGUGCCGcgcgacccccgccAGGAGu -3'
miRNA:   3'- aGGUCAUGGu------CUGGUGCGGC-------------UCCUUg -5'
19055 5' -55.8 NC_004684.1 + 35741 0.66 0.746133
Target:  5'- -aCAGUGCCAGcguCC-CGgCGGGGAu- -3'
miRNA:   3'- agGUCAUGGUCu--GGuGCgGCUCCUug -5'
19055 5' -55.8 NC_004684.1 + 47694 0.66 0.746133
Target:  5'- cCCAGgucuuggcucgGCCAGGCCuugccgccGCGCCGGuaGAGCg -3'
miRNA:   3'- aGGUCa----------UGGUCUGG--------UGCGGCUc-CUUG- -5'
19055 5' -55.8 NC_004684.1 + 2680 0.66 0.743054
Target:  5'- uUUCAGcGCCGGgcaccgcauccccgGCCugGCCGgugccGGGGGCa -3'
miRNA:   3'- -AGGUCaUGGUC--------------UGGugCGGC-----UCCUUG- -5'
19055 5' -55.8 NC_004684.1 + 28684 0.66 0.739965
Target:  5'- gUCCAGgaggauguugcucgACCAGAUCA-GCUG-GGAGCc -3'
miRNA:   3'- -AGGUCa-------------UGGUCUGGUgCGGCuCCUUG- -5'
19055 5' -55.8 NC_004684.1 + 66350 0.66 0.735832
Target:  5'- aCCGGUGCCGccauuucuGGCCccACGCCGc-GAGCu -3'
miRNA:   3'- aGGUCAUGGU--------CUGG--UGCGGCucCUUG- -5'
19055 5' -55.8 NC_004684.1 + 50649 0.66 0.735832
Target:  5'- uUCCAG-GCCAG-CCGCGCuCGGuucauGAACg -3'
miRNA:   3'- -AGGUCaUGGUCuGGUGCG-GCUc----CUUG- -5'
19055 5' -55.8 NC_004684.1 + 13123 0.66 0.735832
Target:  5'- cCgGGUGgCGG-CgCugGCUGAGGAGCu -3'
miRNA:   3'- aGgUCAUgGUCuG-GugCGGCUCCUUG- -5'
19055 5' -55.8 NC_004684.1 + 23645 0.66 0.735832
Target:  5'- gCCGGUACCG--UCA-GCCGAGGcGCu -3'
miRNA:   3'- aGGUCAUGGUcuGGUgCGGCUCCuUG- -5'
19055 5' -55.8 NC_004684.1 + 16227 0.66 0.735832
Target:  5'- cCCGGcGCaucGGCCACaCCGAGGAGu -3'
miRNA:   3'- aGGUCaUGgu-CUGGUGcGGCUCCUUg -5'
19055 5' -55.8 NC_004684.1 + 13604 0.66 0.72543
Target:  5'- cCCGaucCCAGcGCCGCGCCGGucuGGGACc -3'
miRNA:   3'- aGGUcauGGUC-UGGUGCGGCU---CCUUG- -5'
19055 5' -55.8 NC_004684.1 + 19275 0.66 0.72543
Target:  5'- gCCGGaGCCGGAgCCACcuGgCGAcGGAGCg -3'
miRNA:   3'- aGGUCaUGGUCU-GGUG--CgGCU-CCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.