miRNA display CGI


Results 1 - 20 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19060 3' -48.8 NC_004684.1 + 3614 0.65 0.986071
Target:  5'- --gGCCG-CCGAAcacgaguggccgaAGCGCG-CCACCu -3'
miRNA:   3'- auaUGGCuGGCUU-------------UUGUGUuGGUGGc -5'
19060 3' -48.8 NC_004684.1 + 40332 0.65 0.986071
Target:  5'- -cUGCgGACCcggcgcuggagauGAGgcugGACACAauGCCACCGg -3'
miRNA:   3'- auAUGgCUGG-------------CUU----UUGUGU--UGGUGGC- -5'
19060 3' -48.8 NC_004684.1 + 10581 0.65 0.985699
Target:  5'- --cGCCGAuCCGGcugguucggcgcgcGAgguGCGCAACUGCCGu -3'
miRNA:   3'- auaUGGCU-GGCU--------------UU---UGUGUUGGUGGC- -5'
19060 3' -48.8 NC_004684.1 + 10099 0.66 0.98434
Target:  5'- --gGCUGGCCG-GggUGCGGCuCGCCGu -3'
miRNA:   3'- auaUGGCUGGCuUuuGUGUUG-GUGGC- -5'
19060 3' -48.8 NC_004684.1 + 41378 0.66 0.98434
Target:  5'- aGU-CCGGCaCGuuGAACcCGGCCGCCGc -3'
miRNA:   3'- aUAuGGCUG-GCu-UUUGuGUUGGUGGC- -5'
19060 3' -48.8 NC_004684.1 + 37691 0.66 0.98434
Target:  5'- -uUACCugGGCCuguucguACGCAACCACCu -3'
miRNA:   3'- auAUGG--CUGGcuuu---UGUGUUGGUGGc -5'
19060 3' -48.8 NC_004684.1 + 16355 0.66 0.98434
Target:  5'- --cGCUGGCCGAcAAGCugG-CgGCCGa -3'
miRNA:   3'- auaUGGCUGGCU-UUUGugUuGgUGGC- -5'
19060 3' -48.8 NC_004684.1 + 34488 0.66 0.98434
Target:  5'- --cACCG-CCGAGGACAC--CC-CCGa -3'
miRNA:   3'- auaUGGCuGGCUUUUGUGuuGGuGGC- -5'
19060 3' -48.8 NC_004684.1 + 24623 0.66 0.98434
Target:  5'- --gGCCGcucaaACCGggGAuCGCAccggccagGCCGCCa -3'
miRNA:   3'- auaUGGC-----UGGCuuUU-GUGU--------UGGUGGc -5'
19060 3' -48.8 NC_004684.1 + 24327 0.66 0.98434
Target:  5'- --cACCGA-CGAGGACGUggUCGCCGc -3'
miRNA:   3'- auaUGGCUgGCUUUUGUGuuGGUGGC- -5'
19060 3' -48.8 NC_004684.1 + 22954 0.66 0.98434
Target:  5'- --cGCCGaagGCCaGAAGCGCGccaacGCCGCCa -3'
miRNA:   3'- auaUGGC---UGGcUUUUGUGU-----UGGUGGc -5'
19060 3' -48.8 NC_004684.1 + 42905 0.66 0.98434
Target:  5'- --gACCGccACCGAcGACGaacGCCGCCa -3'
miRNA:   3'- auaUGGC--UGGCUuUUGUgu-UGGUGGc -5'
19060 3' -48.8 NC_004684.1 + 50525 0.66 0.98434
Target:  5'- --cACCGG-CGcAGACACuGGCCACCa -3'
miRNA:   3'- auaUGGCUgGCuUUUGUG-UUGGUGGc -5'
19060 3' -48.8 NC_004684.1 + 30018 0.66 0.98434
Target:  5'- --aGCUGGCCGAGcuacAGCAgAAgaCACCGg -3'
miRNA:   3'- auaUGGCUGGCUU----UUGUgUUg-GUGGC- -5'
19060 3' -48.8 NC_004684.1 + 51020 0.66 0.98434
Target:  5'- aUGUGCCGGgUGu--ACuCGGCCGCCa -3'
miRNA:   3'- -AUAUGGCUgGCuuuUGuGUUGGUGGc -5'
19060 3' -48.8 NC_004684.1 + 12390 0.66 0.983099
Target:  5'- gGUGCCGuuuGCCGcaGGAGCcguccgcuguggucgGCGGCCACCc -3'
miRNA:   3'- aUAUGGC---UGGC--UUUUG---------------UGUUGGUGGc -5'
19060 3' -48.8 NC_004684.1 + 6310 0.66 0.982231
Target:  5'- gGUGgCGGCguugCGGAGACAaugccGCCACCGg -3'
miRNA:   3'- aUAUgGCUG----GCUUUUGUgu---UGGUGGC- -5'
19060 3' -48.8 NC_004684.1 + 48900 0.66 0.982231
Target:  5'- --aACUGGCCGAGuucAGCACGugCGgguCCGc -3'
miRNA:   3'- auaUGGCUGGCUU---UUGUGUugGU---GGC- -5'
19060 3' -48.8 NC_004684.1 + 28326 0.66 0.982231
Target:  5'- aGUACgCG-CCGggGuccaaGCGCAaccagcagGCCACCGu -3'
miRNA:   3'- aUAUG-GCuGGCuuU-----UGUGU--------UGGUGGC- -5'
19060 3' -48.8 NC_004684.1 + 27233 0.66 0.982231
Target:  5'- --gGCCG-CUGAc--CGCGAUCACCGa -3'
miRNA:   3'- auaUGGCuGGCUuuuGUGUUGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.